Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00523 ATGGTATTAACGCGCTTCCACTACTATAAAACAAATATTAAAGCTTCGGCTACTTTGAATGCTTTTGTGTCTGTACCCAGATCATCTCTTCCAATTCCTTCCATGGATTTCGCCTCTTCAACTTCCGAACTCCCAAAGACGTACGATGTGCTCATCCACTTCACCGGAGAAGACATCCGCAGAAAATTTGTTTCCCATCTCGATTCTGCCCTCTCTGCTGTTGGGTTCTCCACTTTCCTTCTTCACCAGAATGCAGTGAACCCAATGCACATCGAAGAACATAATCTGAATCTGTGCAGAGTAGCAATTGTTGTTTTCACCGAAACCTATTCTGAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATTCAATGGCACCAAACTTATTGCCGACCTGTTCTGCCCGTGTATTACGAAAGTCAGCCATCTGATGTGCGCCTTCAGAACGGTGATTTTGGAAAAGCCTTCGAAGCAACTGCACACCAAACATTCTCGGAACAACAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTTACCAAAGCTGCACATTTCTATGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACACAATTGTTAAGGGCGTTCTTAATTTACCACTCTTGTCTGCTACTGAATTTCCAGTTGGATTACAATCCTACGTGGAAGATGTGATTCGCACTATCGAAAATAAATCCACCGGAGTTTGTATGATAGGGATATATGGAATGGAAGGATCTGGTAAAACCACCGTAGCCAAAGCCGTTTACAATCAAATTCATGATAGATTCGTGGAGAAAAGTTTCATTGAAGATAATGCAGAAGTTAGTCGAACAAAAGGTCATGTTTATTTACCGGAAAAACTTCTTTCAGATCTCCTGAAAACAAAGGTGGAGATACATAGCGTTGAGATGGGAAGAAGTATGATTTGGGGAAGACTTTATGGTAAGAGGGTACTCATTGTACTTGACAATGTGAATGAGTATGAGTATGGTGCATTATCCGACCTATGGGAATGTCGTGGATGGTCAGGCAAAGGAAGTGTTATAATAATTACATCAACACATGAAAGCGTATTAAGGACACGTCAAGTTGATGCTGTTTTTAGGATAAATCCAATGAACGCGAACGAGTCCCTCGAGCTTCTTAGTTGGCACGCATTTAAAGAAGCAAAACCCAAAGAAGAATACTGTGACCTTGCCAAAGCATTAGTTACTCATTGTGAAGGACTACCTCTAGCCCTTGAAGTCATTGGAAGTTATTTATATGAAAGGACGAAAAAAGAATGGCATGGAGTATTGTCCAAATTAGTGAGAATTCCTCAGCTTGCAGTTCTACAGAAATTGAAAATAAGCTTCAACGGTTTACATAATCAAATGGAAAAAGATTTATTTCTTGATATATGTTGTTTCTTTGTTGGTAAAGGCAGAGCTTATGTAACGAAGATCCTAAATGGCGGTGGAATAGACGCTGATTGTGGAATAAGAGTTCTCATAGAACGTAGCCTCATAAAAGTAAAAAAGAACAATAAATTTGGAATGCATCCTTTACTAGGAGATATGGGAAGAGAAATTATTCGTGAAATTTCAAAAAAGGAACCTGAAAACAGTAGGCGGTGGTTTGATGAGGGTATGAAACATGCAATGCCAAAAACTACTGTAAGAACATTCTTAATCTACGGTTTTGAAACATCTTTTTGGAAGGGTTTGCTTTCTCAGGTAAGAGACACATCAAGAATGCTGAAACTCGCTCGACATTCTGAGTACCTCTCTAAGAAATTAAGATGTATCAGTTTGCAAGGGTTTTCTTCAGAATACCTACCTAACGACTTTTATCTGCATGAAGCAATAGTGATTGATTTTAAAACACAGTCTTCTTCGACTTATCTGGAAAGAACCCCAGGTATTTGCCAGCAGTGA 1938 0.3994 MVLTRFHYYKTNIKASATLNAFVSVPRSSLPIPSMDFASSTSELPKTYDVLIHFTGEDIRRKFVSHLDSALSAVGFSTFLLHQNAVNPMHIEEHNLNLCRVAIVVFTETYSESAWCLHQLQQIIQWHQTYCRPVLPVYYESQPSDVRLQNGDFGKAFEATAHQTFSEQQLEHGMSRWSHALTKAAHFYGWDESNYRSDAELVDTIVKGVLNLPLLSATEFPVGLQSYVEDVIRTIENKSTGVCMIGIYGMEGSGKTTVAKAVYNQIHDRFVEKSFIEDNAEVSRTKGHVYLPEKLLSDLLKTKVEIHSVEMGRSMIWGRLYGKRVLIVLDNVNEYEYGALSDLWECRGWSGKGSVIIITSTHESVLRTRQVDAVFRINPMNANESLELLSWHAFKEAKPKEEYCDLAKALVTHCEGLPLALEVIGSYLYERTKKEWHGVLSKLVRIPQLAVLQKLKISFNGLHNQMEKDLFLDICCFFVGKGRAYVTKILNGGGIDADCGIRVLIERSLIKVKKNNKFGMHPLLGDMGREIIREISKKEPENSRRWFDEGMKHAMPKTTVRTFLIYGFETSFWKGLLSQVRDTSRMLKLARHSEYLSKKLRCISLQGFSSEYLPNDFYLHEAIVIDFKTQSSSTYLERTPGICQQ 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00523 645 Gene3D - 45 214 IPR035897 -
Viun10g00523 645 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 48 630 IPR044974 GO:0006952
Viun10g00523 645 SUPERFAMILY "Winged helix" DNA-binding domain 453 536 IPR036390 -
Viun10g00523 645 ProSiteProfiles TIR domain profile. 46 213 IPR000157 GO:0007165
Viun10g00523 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 474 IPR027417 -
Viun10g00523 645 Gene3D - 380 463 IPR042197 -
Viun10g00523 645 SMART till_3 47 187 IPR000157 GO:0007165
Viun10g00523 645 PRINTS Disease resistance protein signature 319 333 - -
Viun10g00523 645 PRINTS Disease resistance protein signature 244 259 - -
Viun10g00523 645 PRINTS Disease resistance protein signature 414 428 - -
Viun10g00523 645 Pfam NB-ARC domain 227 444 IPR002182 GO:0043531
Viun10g00523 645 Pfam TIR domain 48 209 IPR000157 GO:0007165
Viun10g00523 645 Gene3D - 215 374 IPR027417 -
Viun10g00523 645 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 190 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00523 Viun-Chr10 4659995 4663851 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00523 33 559 WRKY Transcription Factor Family AT4G12020 28.518 6.25e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00523 - - vun:114165123 999.579