Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00520 ATGGCGCCAGAACTTCCTGATTTGACCCCTGACACCCCTTCACCTACCTTCAAACGTGGTTCAAAGGGTCTGGTGTCTAAAGTCTTAACGCGCTTCCAGTACAGTAAAATAATAAATATTAAAGATCTGGCTACTTCGAACGCTTTTGTGTCCGATACAGATCATCTCTTTCGATTACTTACTTCCTTGGAATTCGCGTCTTCAACTTCCAAACTCCCAGATATGTACGATGTGCTCATCCACTTCACTGGAGAAGACATCCGCAGAAAATTTGTTTCCCATCTCGAATCTGCTCTCTCTGCAGTTGGATTCACCACTTTCCTTCTCCACCAGAATGCAGTGAACCCAATGCACATCGAAGAACATAATCTGAATCTGTGCAGAGTAGCAATTGTTGTTTTCACCAAAACCTATTCTCAGTCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCACCAAACTTATTGCCGACATGTTCTGCCCGTGTATTACGAAATTCAGCCATCTGATGTGCGTCTTCAGAACGGTGATTTTGGAAAAGCCTTCGAAGCAACTGCACACCAAACATTCTCAGAACAACAACTGGAGCATGGCATGTCCAGGTGGAGCCACGCACTCACCAAAGCTGCACATTTCTATGGATGGGATGAGAGCAATTACAGGAGTGATGCGGAACTAGTGGACACAATTGTTAAGGGCGTTCTTAATTTACCACTCTTGTCTGCTACTGAATTTCCAGTTGGATTACAATCCTACGTGGAAAGAGTGATTCGCACTATCGAAAATGAATCCACCGGAGTTTGTATGATAGGGATAAGTGGAATGGAAGGATCTGGTAAAACCACCGTAGCCAAAGCCGTTTACAATCAAATTCATGATAGATTCATAGAGAAAAGTTTCATTGAAGATAATCCAGAAGTTAGTCGAACAAGAGGGCATCTTCATTTACTAAAAAAACTTCTTTTAGATATCCTGAAAATAAAGGTTGAGATACAGAACGTTGAGATGGGAAGAATTATGATTCGGGAAAGACTTTATGGGAAGAGGATGCTCATTGTACTTGATGATCTAAATCAGTATAAGTATCATGAATTATCAGACCTATGGGAATGTCGTGCATGGTCAGGCAGAGGAAGTGTAATAATAATTACTTCAACATATGAAAACCTACTAAGGACAAGTCAAGTTGATGCTGTTTTTCGGATAAATCCAATGAACCCAAATGAGTCCCTCGAGCTTCTTAGTTGGCACGCATTTAAAGAAGCAAAACCCAAAGAAGAATACCATGACCTTGCTAAAACAATAGTTACTCATTGTGGAGGACTACCTCTAGCCCTTGAAGTCCTTGGAAGTTATTTATATGAAAGGACGAAAAAAGAATGGCATACAGTATTGTCCAAATTAGTGAGAATTCCCCAGCTTGAAGTTCTACCGATATTGAAAATAAGCTTCAATGGTTTACGTAATCAAATGGAGAAAGATTTATTTCTTGATATATGTTGCTTCTTTGTTGGTAAAAGCAGAGCTTATGTTACGAAGATCCTAAATGGTTGTGGAATAGACGCGGATTCTGGAATAAGAGTTCTCATAGAACGTAGCCTCATAAAAGTAAAAAAGAACAATAAATTTGGAATGCATTCTGTGCTACGAGATATGGGACAACAAATTGTTCGTGAAATTTCAGGAAAGGAACCTGAGAACTGTCGGCGGTGGTACGATGAGCGGATGAAACATGCATTGTCAAAGAATAATCACACAAAAGTCATGCAAACATTAAGAGATTTCTTCAAACCTTACCCTTTAGAGGTAAGAGACACATCAAGAATGCTGAAACTCGCTGGACATTCTGAGTACCTCTCCAAGAAACTGGGATGTATCAGTTTGCAAGGGTTTTCTTCAGATTACCTACCTAACGACCTTCATCTGCATGATGCCATAGTGATTGATATAAAACACAGTCTTCTTAGACTTGTCTGTAAAAAACCACAGGTTTTGGCATCGCTAAAAGTCCTTAATCTTAGTCACTCCAAGTACCTGACAAAAGTCCTTGACTTTTCAAGACTACCAAGTCTTGAACAGCTCATTCTCAAAGATTGCCCAAGATTGCGTGAAGTGCACAAATCTATTGGATGTCTCTGCAATCTTACACTGCTAAATTTGAAGGACTGTACAAGTCTACGCAATCTCCCTGGAGAGATATATATGTTGAAGTCTTTAAAAACTCTCATTCTTTCTGGTTGTCCGAAGATTGACCTATTGGAAACAGATATAGTACAAATGAAATCCTTGGTAATTCTAATTACTGAAAATACAGCTTCGAAACAAGTGCCTTTTTCAATTGTAACCTCAAAAAGCATTGGATATATATCCTTATGTGGACTTGAGGGATTATCACATAATCTTTTTCCTTCTATCATTCGGTTTTGGATGTCACCAACAATGAATACCCTATCTTATAAACATTCGTTTTGCATGGATATGGAAAATAATAGTTGGGATGATTTTGCACCAATGCTTAGCAGCCTTGCAAATCTTCGAAGTGTTTTGGTGCAATGTGACACTGAGTTTCAACTATCAAAGCAACTAGAAACTATTATGATTGAATATGGAGCAAATAGTACAAAACCAGGAACTTCAAAGCAGCACTTCAAGTCTTCTTTGATTGGTGTTGGAAGATGCAAATATTTCTTCAATGCTGTCAGCAATAGCATTTCTCAGGTATTTGCAAGCATTGAGTCATGTGATGCTTCTCTCCCGGGTGACAATGATCCTTATTGGTTGGCCCATACAGGTGAGGGACATTCTGTGTCTTTCATTGTGCCTCAGAATCGTGTCCTGAATGGATTGACTTTATGTGTTGTTTATTTATCAATTCCTGAAATTGTGGCAAGTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCACATTACATCTACACAACCATGGCACGGCAATTTTCTTTAACGATATAGATTGGCGTGGTATAATATCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTCTTGATTTTTTGTCATGGATTGGTAGTCACGAGAACAATTGTCTATCTGATATTTGCTGAATCAAATGACTTAGAAATGGAACCTGTGCCAACGAAAAATTCCCACGTTAGATTTATAAAAAAAGTTTAA 3174 0.3872 MAPELPDLTPDTPSPTFKRGSKGLVSKVLTRFQYSKIINIKDLATSNAFVSDTDHLFRLLTSLEFASSTSKLPDMYDVLIHFTGEDIRRKFVSHLESALSAVGFTTFLLHQNAVNPMHIEEHNLNLCRVAIVVFTKTYSQSAWCLHQLQQIIQWHQTYCRHVLPVYYEIQPSDVRLQNGDFGKAFEATAHQTFSEQQLEHGMSRWSHALTKAAHFYGWDESNYRSDAELVDTIVKGVLNLPLLSATEFPVGLQSYVERVIRTIENESTGVCMIGISGMEGSGKTTVAKAVYNQIHDRFIEKSFIEDNPEVSRTRGHLHLLKKLLLDILKIKVEIQNVEMGRIMIRERLYGKRMLIVLDDLNQYKYHELSDLWECRAWSGRGSVIIITSTYENLLRTSQVDAVFRINPMNPNESLELLSWHAFKEAKPKEEYHDLAKTIVTHCGGLPLALEVLGSYLYERTKKEWHTVLSKLVRIPQLEVLPILKISFNGLRNQMEKDLFLDICCFFVGKSRAYVTKILNGCGIDADSGIRVLIERSLIKVKKNNKFGMHSVLRDMGQQIVREISGKEPENCRRWYDERMKHALSKNNHTKVMQTLRDFFKPYPLEVRDTSRMLKLAGHSEYLSKKLGCISLQGFSSDYLPNDLHLHDAIVIDIKHSLLRLVCKKPQVLASLKVLNLSHSKYLTKVLDFSRLPSLEQLILKDCPRLREVHKSIGCLCNLTLLNLKDCTSLRNLPGEIYMLKSLKTLILSGCPKIDLLETDIVQMKSLVILITENTASKQVPFSIVTSKSIGYISLCGLEGLSHNLFPSIIRFWMSPTMNTLSYKHSFCMDMENNSWDDFAPMLSSLANLRSVLVQCDTEFQLSKQLETIMIEYGANSTKPGTSKQHFKSSLIGVGRCKYFFNAVSNSISQVFASIESCDASLPGDNDPYWLAHTGEGHSVSFIVPQNRVLNGLTLCVVYLSIPEIVASECLRSVLIVNYTKCTLHLHNHGTAIFFNDIDWRGIISNLGSGDKVEIFLIFCHGLVVTRTIVYLIFAESNDLEMEPVPTKNSHVRFIKKV 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00520 1057 SUPERFAMILY L domain-like 548 851 - -
Viun10g00520 1057 SMART till_3 75 215 IPR000157 GO:0007165
Viun10g00520 1057 Pfam NB-ARC domain 254 472 IPR002182 GO:0043531
Viun10g00520 1057 Gene3D - 408 491 IPR042197 -
Viun10g00520 1057 SUPERFAMILY Toll/Interleukin receptor TIR domain 66 218 IPR035897 -
Viun10g00520 1057 PRINTS Disease resistance protein signature 272 287 - -
Viun10g00520 1057 PRINTS Disease resistance protein signature 347 361 - -
Viun10g00520 1057 PRINTS Disease resistance protein signature 666 682 - -
Viun10g00520 1057 PRINTS Disease resistance protein signature 442 456 - -
Viun10g00520 1057 Pfam TIR domain 76 237 IPR000157 GO:0007165
Viun10g00520 1057 Gene3D - 243 402 IPR027417 -
Viun10g00520 1057 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 76 778 IPR044974 GO:0006952
Viun10g00520 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 502 IPR027417 -
Viun10g00520 1057 Gene3D Ribonuclease Inhibitor 583 789 IPR032675 -
Viun10g00520 1057 Gene3D - 74 242 IPR035897 -
Viun10g00520 1057 ProSiteProfiles TIR domain profile. 74 241 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00520 Viun-Chr10 4623866 4630761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00520 76 831 WRKY Transcription Factor Family AT4G12020 26.962 1.76e-58 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00520 - - vun:114165123 2078.52