Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00519 ATGTGTTCATTAACTTTGGGGGAGAAGAAATCGGAGGGAATGAAGGTGGAAGAACATATGCGATCAATAGCAGGCTCTAAGATATCAATAATCATTTTCTCCAAAACATACACTGAATCTACTTGTTGTCTTCTTGAGCTCGAAAAAATCGTTGAATGCTACCAAACTTTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTGGATGTACATCATCAGAAGGGTGATTTTGGAAAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCGTTGTTCAGGTGGAGCCGTGCACTCGCCACAGCTGCAGGTATCACTTGTTGGGATGCCAGATATTTCAGGCATGATGCTGAACTCGTGGAAGTAATTGTTAGCCGCGTTCAGACATTGTTGGACTATTCAGAATTGTCTATTACTCGATTTCCTGTAGGATTAGAGTCGCACATGGAAAAGCTGATTGGATGTATTGAAAACCATTCCGCTGAAGTCTGTATGATAGGGATATGGGGAACGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTCAATTCATTGGTAAGAGTTTTATAGAAAATATTGCAGAAGTTCGGAATCGAGTATATAGAACGGACGTTGATTTGCAAAAAAATCTTATTTATGATGTCCTAAAATCCACGTTAAAGGTGGAAAGCCATGGGATGGGAAGAACTATGATCGAGACTGAACTTTCACTAAAAAAGTTGCTCATTGTGGTTGATGATGTAAATGAGTTTAGCCAATTAGAAAACCTATGCGGGAATCGTGAATGGTTCGGTCAAGGAAGTGTGATAATCATTACAGCTAGAGATGTTCGGCTGCTAAACCGACTCAAAGTAGATTATGTTTATAAAATGGATGGTATGAACGAAAATGATTCCTTTGAGCTTTTCAGTTGTCATGCCTTCGGTGAAGCAAAACCAAGAAAAGACGTGAAGGAACTTGCAAGAAACATAGTTGCTCAATGTGGAGGATTACCACTAGCTCTTCAGGTCCTTGGTTCCTTTTTATGTGACAGAACAATCGAAGAGTGGGAAAGTGTATTGTCAAAACTAAAAATAATTCCTACGGGTGTAGTTCAAAAAAAATTGAAAATAAGTTTTGACGGTTTAAGTGACATGGAACAGAATATATTTCTTGATGTATGTTTTTTCTTTATTGGTAGAGAGAGAGGCTATGTTACAGAAATGCTAAATAACTGGGAAGAGCATGCTGATATTGGAATAACAGTTCTCATAAAATGTGGCCTCATACAAGTTGACAGGAACAACAAACTTGAAATGCATCCTTTGTTACAGGACATGGGAAGAGAAATTATCCGTCAGAGATGGCCAAAAGAATCGGCGAAAAGAAGTCTATTATGGTTTCAGGGTGACGTAAAAGATGTATTGACAAAGAACATTGAGACAAGCTACCCAGGGGTTGTCTTAGAAACTGCATTCAACCAGCAGAGCTCACTTCAAACCTCATATGCTTTTGATGGAAATGAAGAGCTAACTTAG 1566 0.3914 MCSLTLGEKKSEGMKVEEHMRSIAGSKISIIIFSKTYTESTCCLLELEKIVECYQTFGQIVLPVFYEIDPLDVHHQKGDFGKALEEAAHKSYSGEQVEHALFRWSRALATAAGITCWDARYFRHDAELVEVIVSRVQTLLDYSELSITRFPVGLESHMEKLIGCIENHSAEVCMIGIWGTGGSGKTTIAKAIYNRIYRQFIGKSFIENIAEVRNRVYRTDVDLQKNLIYDVLKSTLKVESHGMGRTMIETELSLKKLLIVVDDVNEFSQLENLCGNREWFGQGSVIIITARDVRLLNRLKVDYVYKMDGMNENDSFELFSCHAFGEAKPRKDVKELARNIVAQCGGLPLALQVLGSFLCDRTIEEWESVLSKLKIIPTGVVQKKLKISFDGLSDMEQNIFLDVCFFFIGRERGYVTEMLNNWEEHADIGITVLIKCGLIQVDRNNKLEMHPLLQDMGREIIRQRWPKESAKRSLLWFQGDVKDVLTKNIETSYPGVVLETAFNQQSSLQTSYAFDGNEELT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00519 521 Pfam NB-ARC domain 155 385 IPR002182 GO:0043531
Viun10g00519 521 SMART till_3 2 114 IPR000157 GO:0007165
Viun10g00519 521 Pfam TIR domain 20 136 IPR000157 GO:0007165
Viun10g00519 521 ProSiteProfiles TIR domain profile. 1 140 IPR000157 GO:0007165
Viun10g00519 521 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 113 IPR035897 -
Viun10g00519 521 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 489 IPR044974 GO:0006952
Viun10g00519 521 Gene3D - 309 393 IPR042197 -
Viun10g00519 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 402 IPR027417 -
Viun10g00519 521 Gene3D - 8 141 IPR035897 -
Viun10g00519 521 Gene3D - 142 305 IPR027417 -
Viun10g00519 521 SUPERFAMILY "Winged helix" DNA-binding domain 381 485 IPR036390 -
Viun10g00519 521 PRINTS Disease resistance protein signature 344 358 - -
Viun10g00519 521 PRINTS Disease resistance protein signature 174 189 - -
Viun10g00519 521 PRINTS Disease resistance protein signature 251 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00519 Viun-Chr10 4616975 4619209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00519 152 485 WRKY Transcription Factor Family AT5G45050 30.588 1.56e-46 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00519 - - vun:114166788 1025