Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00518 ATGGAGTTCGCTTCTTCATCATCATCATCTTCATCCTTATTAAAATCAGAACCCCATTTCATATACGATGTGTTCATTAACTTTGGGGGAGAAGAAATCGGTAAAAAGTTCGTTTCTCATCTTCATTCTGTCCTTTTACAAGCTGAATTCGAAACTTTGATTAACGAGGAGAATGTTCAGGAGGGAATGAAGGTGGAAGAACATATGCGATCAATAGCAGGCTCTAAGATATCAATAATCATTTTCTCCAAAACATACACTGAATCTACTTGTTGTCTTCTTGAGCTCGAAAAAATCGTTGAATGCTACCAAACTTTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTGGATGTACATCATCAGAAGGGTGATTTTGGAAAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCGTTGTTCAGGTGGAGCCGTGCACTCGCCACAGCTGCAGGTATCACTTGTTGGGATGCCAGATATTTCAGGCATGATGCTGAACTCGTGGAAGTAATTGTTAGCCGCGTTCAGACATTGTTGGACTATTCAGAATTGTCTATTACTCGATTTCCTGTAGGATTAGAGTCGCACATGGAAAAGCTGATTGGATGTATTGAAAACCATTCCGCTGAAGTCTGTATGATAGGGATATGGGGAACGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTCAATTCATTGGTAAGAGTTTTATAGAAAATATTGCAGAAGTTCGGAATCGAGTATATAGAACGGACGTTGATTTGCAAAAAAATCTTATTTATGATGTCCTAAAATCCACGTTAAAGGTGGAAAGCCATGGGATGGGAAGAACTATGATCGAGACTGAACTTTCACTAAAAAAGTTGCTCATTGTGGTTGATGATGTAAATGAGTTTAGCCAATTAGAAAACCTATGCGGGAATCGTGAATGGTTCGGTCAAGGAAGTGTGATAATCATTACAGCTAGAGATGTTCGGCTGCTAAACCGACTCAAAGTAGATTATGTTTATAAAATGGATGGTATGAACGAAAATGATTCCTTTGAGCTTTTCAGTTGTCATGCCTTCGGTGAAGCAAAACCAAGAAAAGACGTGAAGGAACTTGCAAGAAACATAGTTGCTCAATGTGGAGGATTACCACTAGCTCTTCAGGTCCTTGGTTCCTTTTTATGTGACAGAACAATCGAAGAGTGGGAAAGTGTATTGTCAAAACTAAAAATAATTCCTACGGGTGTAGTTCAAAAAAAATTGAAAATAAGTTTTGACGGTTTAAGTGACATGGAACAGAATATATTTCTTGATGTATGTTTTTTCTTTATTGGTAGAGAGAGAGGCTATGTTACAGAAATGCTAAATAACTGGGAAGAGCATGCTGATATTGGAATAACAGTTCTCATAAAATGTGGCCTCATACAAGTTGACAGGAACAACAAACTTGAAATGCATCCTTTGTTACAGGACATGGGAAGAGAAATTATCCGTCAGAGATGGCCAAAAGAATCGGCGAAAAGAAGTCTATTATGGTTTCAGGGTGACGTAAAAGATGTATTGACAAAGAACATTGAGACAAGCTACCCAGGGGTTGTCTTAGAAACTGCATTCAACCAGCAGAGCTCACTTCAAACCTCATATGCTTTTGATGGAAATGAAGAGCTAACTTAG 1713 0.3882 MEFASSSSSSSSLLKSEPHFIYDVFINFGGEEIGKKFVSHLHSVLLQAEFETLINEENVQEGMKVEEHMRSIAGSKISIIIFSKTYTESTCCLLELEKIVECYQTFGQIVLPVFYEIDPLDVHHQKGDFGKALEEAAHKSYSGEQVEHALFRWSRALATAAGITCWDARYFRHDAELVEVIVSRVQTLLDYSELSITRFPVGLESHMEKLIGCIENHSAEVCMIGIWGTGGSGKTTIAKAIYNRIYRQFIGKSFIENIAEVRNRVYRTDVDLQKNLIYDVLKSTLKVESHGMGRTMIETELSLKKLLIVVDDVNEFSQLENLCGNREWFGQGSVIIITARDVRLLNRLKVDYVYKMDGMNENDSFELFSCHAFGEAKPRKDVKELARNIVAQCGGLPLALQVLGSFLCDRTIEEWESVLSKLKIIPTGVVQKKLKISFDGLSDMEQNIFLDVCFFFIGRERGYVTEMLNNWEEHADIGITVLIKCGLIQVDRNNKLEMHPLLQDMGREIIRQRWPKESAKRSLLWFQGDVKDVLTKNIETSYPGVVLETAFNQQSSLQTSYAFDGNEELT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00518 570 PRINTS Disease resistance protein signature 223 238 - -
Viun10g00518 570 PRINTS Disease resistance protein signature 300 314 - -
Viun10g00518 570 PRINTS Disease resistance protein signature 393 407 - -
Viun10g00518 570 ProSiteProfiles TIR domain profile. 20 189 IPR000157 GO:0007165
Viun10g00518 570 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 538 IPR044974 GO:0006952
Viun10g00518 570 Pfam TIR domain 22 185 IPR000157 GO:0007165
Viun10g00518 570 SUPERFAMILY "Winged helix" DNA-binding domain 430 534 IPR036390 -
Viun10g00518 570 Gene3D - 15 188 IPR035897 -
Viun10g00518 570 Gene3D - 358 442 IPR042197 -
Viun10g00518 570 Gene3D - 189 353 IPR027417 -
Viun10g00518 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 451 IPR027417 -
Viun10g00518 570 SMART till_3 21 163 IPR000157 GO:0007165
Viun10g00518 570 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 162 IPR035897 -
Viun10g00518 570 Pfam NB-ARC domain 204 434 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00518 Viun-Chr10 4616951 4619209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00518 201 534 WRKY Transcription Factor Family AT5G45050 30.588 2.16e-46 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00518 - - vun:114166788 1131.32