Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00514 ATGGAGTTCGCTTCTTCATCATCATCATCATCCTCATCCTTCATAAAATCAGAACCCCGTTTCATATACGATGCATTCATCAACTTCGGGGGAGAAGACATCGGTAGAAAGTTCGCTTCTCATCTCACTTATGCCCTTTTACAAGCTCAAGTCAAAACTTTTATTAGCGACGAGAGTCTGCCGAAGGGACTGGAGCTGGAAGAGCACATGCGAGCAATAGGAGGCACTAAGATTGCAATAATCGTTTTCTCCAAAACATACACTGAATCGGCCTGTTGTCTTCTTGAGCTAGAAAAAATTATTGAATGCCTCGAAACTTTTGGGCAAATAGTTTTGCCCGTATTTTACGACAATGGACCACGGTATGTACGTGATCATGATCGGAATGATTTTGGAAAAGCGATGGAAGAAACTGCACGCAAAAGCTATTCAGGTGAACAACTGAAGCAAGTGTTGTCAAGGTGGAGGCGTGCTCTAAACAAAGCTGCAGGTATCATCCATGGTTTGTATGGTAGAAATTTCAGGCATGATGCTGAACTTGTGGAGGTAACTGTTAGACGCGTTCAGTCTTTGCTGGACTATGAGGACTTGTCTGTTTTTCCTTTTCCTGTTGAATTAGAGTCCCACGTAAAAAAGGTGATTAAATGTATTGAAAATCATTCCACCAAAGTGTTCATGATAGGGATATGGGGAAAGGAAGGATCGGGTAAAACTATCTTAGCCAAAGTCATCTATAATCGAATTTATCGTCGATTCATTGGTAAGAATTATTTTGAATATATTAAAGGAGTTTGGGATCGAGTAGATAGAAGGGATGTTGATTTGAAAGAATTTGTTAATGATGTCCTAAAAGACAAGTTCGAGATTGAAAGCATTCGGAGGCGAAGAGTTATTATGGAGAAGACTGAACTTTTTCGAAGGAAGTTGCTCATTGTGTTTGATGGTGTGACTGAGTTTGGCCAACTAGAAAGCCTATACCGGAATCGTAAATGGTTCGGTCAAGGAACTGTAATTATCATTACAACTAGAGATGTTCAAATACTGAAGCGACTCAAAGTTGATTATGTTTATAAAATGAATGTTATGAACGAAAATAATTCCCTTTTAACTTTTCAGTTCTCATGTCTTCAGATAAGCATAACCAAGAAAAGAACTGAATGA 1161 0.3893 MEFASSSSSSSSSFIKSEPRFIYDAFINFGGEDIGRKFASHLTYALLQAQVKTFISDESLPKGLELEEHMRAIGGTKIAIIVFSKTYTESACCLLELEKIIECLETFGQIVLPVFYDNGPRYVRDHDRNDFGKAMEETARKSYSGEQLKQVLSRWRRALNKAAGIIHGLYGRNFRHDAELVEVTVRRVQSLLDYEDLSVFPFPVELESHVKKVIKCIENHSTKVFMIGIWGKEGSGKTILAKVIYNRIYRRFIGKNYFEYIKGVWDRVDRRDVDLKEFVNDVLKDKFEIESIRRRRVIMEKTELFRRKLLIVFDGVTEFGQLESLYRNRKWFGQGTVIIITTRDVQILKRLKVDYVYKMNVMNENNSLLTFQFSCLQISITKKRTE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00514 386 Pfam TIR domain 23 188 IPR000157 GO:0007165
Viun10g00514 386 Pfam NB-ARC domain 207 377 IPR002182 GO:0043531
Viun10g00514 386 ProSiteProfiles TIR domain profile. 21 192 IPR000157 GO:0007165
Viun10g00514 386 SMART till_3 22 165 IPR000157 GO:0007165
Viun10g00514 386 Gene3D - 18 197 IPR035897 -
Viun10g00514 386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 374 IPR027417 -
Viun10g00514 386 ProSiteProfiles S1 domain IF1 type profile. 314 360 IPR006196 GO:0003723|GO:0003743|GO:0006413
Viun10g00514 386 PRINTS Disease resistance protein signature 303 317 - -
Viun10g00514 386 PRINTS Disease resistance protein signature 226 241 - -
Viun10g00514 386 Gene3D - 198 356 IPR027417 -
Viun10g00514 386 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 363 IPR044974 GO:0006952
Viun10g00514 386 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00514 Viun-Chr10 4607569 4609382 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00514 19 383 WRKY Transcription Factor Family AT4G12020 24.468 6.90e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00514 - - vun:114166789 530.791