Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00512 ATGGAATTCGCGTCTTCATCATCCAACCTCCAACGGAAGTACGATGTGCTCATCCACTTCGATGGAGAAGATATCCGCAGAAAATTTGTTTCTCATCTCGATTTCACCCTCTCTGCTGTTGGACTCACCACTTTCCTTCATCAGGAGAATGCAGTGAAGGGAATGAAGATCCAAGAACCTATTCTCGACTTCTGTCGTGTAGCAATTGTTGTTTTCACCAAAACCTATTCTGAATCTGCTTGGTGTCTTCATCAACTTCAACAAATCATTCAATGGCATGAAACTTATTCCAGACATGTTCTGCCGGTATATTACGAAATTCAGCCATCTGATGTTCGTCTTCAGAAAGGTCATTTTGGTAAAGCCTTCAAAGCAACTGCACACCAAACATTCTCAGGACAAGAACTGGAACATGGCATGTGCAGGTGGAGCCGCGCACTCACCAAAGTTGCAAATTTCTTTGGATGGGATGATAGCAATTACAGGAGTGATGCTGAACTAGTGGACAGAATTGTTAAGAGCGTTCTTAATTTACCAATCTTGTCTGCTACTGAATTTCCAGTTGGACTAGAGTCCCAGGTGAAAGATGTGATTCGAACCATCAAAAGTAATCCCAGGAAAGTTTGTATCATAGGGATATGGGGAATGAGAGGATCGGGCAAAACTACTCTTGCAAAAGCCATTTATAATCAAATTCATGGTACATTCACGGAGAAAAGCTTCATCGAGAATATTTCAGATTTTAGTCAAAGAAGGCATCTTAATTTACAAAAACGACTTCTTTCAGATATCCTGAAAACAAAGATAAATATACATAGCGTTGAGATGGGAAGAAGTATGATTCGAGAAAGACTTTATGGGAAAAGAGTGCTCATTGTACTTGACGATATGATCGATGAGCATTATCCATTATTAGACTTAAGGATATGTCGTGCATCGCTCGGTGGAGGATCTGTAATAATCCTTACAACAAGATATAAAGACATACTGAGGAAACATGGAGTTGATGCTGTTTTTGGGAAGAATCTATTGAACTCAAACGAGTCCCTTGAGCTTTTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACCATTTCCTTGCAAAAAGTGTAGTTGCTTATTGTGAAGGAAATCCTCTCTCTCTTGAAGTCATTGGAAGTTATTTATATGAAAGGACGAAAATAGAATGGCATAGAGTATTGTTAAAATTAATCGAAGTTCCCCAGTTTGAAATTCTACCGATTTTGAAAATAAGCTTCGATGGTTTACGTGATCAAACGGAAAAAGATTTATTCCTTGATATATGTTGTTTCTTTGTTGGTAAAGGCAGAGCTTATGTAACGAAGATCCTAAATGGCTGTGGAATAGACGCTGATTGTGGAATAAGAGTTCTCTTAGAGCGTAGCCTCATAAAAGTGAAAAGAAACAATAAATTTGGAATTCATCCTTTGGTACGAGATATGGGAAGAGAAATTATTGATGATATTTCAAGAAAGGAACCTAGGAAGAACAGATGGTTGTGGCTTGATGATGATATGAAACATGCACCGTCAAAGTATACCACTGGATATTCTAAGTACCTCTCTAAGAAACTGAGATGTATCAGTTTGCAATGCTTTTCTTCAGAATACCTATGTAACGACTTTTATCTGCATGATGCAATAGTGGTTGATTTAAAACGCAGTCTTCTTGGAATCATCTGGAAACAACCCCAGGGACTTGCAAGCAGTGAGTCTTGTGATGTTTTTCTGCCAGGTGGCAATGATCCTTATTGGCTGGTCCATATGGGTGAGGGACATTCTGTTTCTTTCACTTTGCCTAAAGATCACGTCTTGAAGGGAATGGCACTGTGTGCCATTTATTCACCAAACCCTGAAATTTTGACAACTGAGTGTCTTAGAAGTGTCTTAATTGTTAATTATACAAAGTGTACATTGCAGATACATTATCATGGCACGATAATTTCCTTTAATGATATAGACTGGCAAGGTATAATATCAAATTTAGGATCAGGAGACAGAGTAGAGATTTTTGTGATTTTTTGTGATGGATTGGTAGTCAAGAGAACAGTAGTCTATCTGATATGTGGTGAATCAAATGACTTAGAAAAGGAGCCTGGTTAG 2133 0.383 MEFASSSSNLQRKYDVLIHFDGEDIRRKFVSHLDFTLSAVGLTTFLHQENAVKGMKIQEPILDFCRVAIVVFTKTYSESAWCLHQLQQIIQWHETYSRHVLPVYYEIQPSDVRLQKGHFGKAFKATAHQTFSGQELEHGMCRWSRALTKVANFFGWDDSNYRSDAELVDRIVKSVLNLPILSATEFPVGLESQVKDVIRTIKSNPRKVCIIGIWGMRGSGKTTLAKAIYNQIHGTFTEKSFIENISDFSQRRHLNLQKRLLSDILKTKINIHSVEMGRSMIRERLYGKRVLIVLDDMIDEHYPLLDLRICRASLGGGSVIILTTRYKDILRKHGVDAVFGKNLLNSNESLELFSWHAFREAKPKEEYHFLAKSVVAYCEGNPLSLEVIGSYLYERTKIEWHRVLLKLIEVPQFEILPILKISFDGLRDQTEKDLFLDICCFFVGKGRAYVTKILNGCGIDADCGIRVLLERSLIKVKRNNKFGIHPLVRDMGREIIDDISRKEPRKNRWLWLDDDMKHAPSKYTTGYSKYLSKKLRCISLQCFSSEYLCNDFYLHDAIVVDLKRSLLGIIWKQPQGLASSESCDVFLPGGNDPYWLVHMGEGHSVSFTLPKDHVLKGMALCAIYSPNPEILTTECLRSVLIVNYTKCTLQIHYHGTIISFNDIDWQGIISNLGSGDRVEIFVIFCDGLVVKRTVVYLICGESNDLEKEPG 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00512 710 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00512 710 Pfam TIR domain 13 175 IPR000157 GO:0007165
Viun10g00512 710 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00512 710 Gene3D - 343 427 IPR042197 -
Viun10g00512 710 Gene3D - 176 337 IPR027417 -
Viun10g00512 710 Pfam NB-ARC domain 191 407 IPR002182 GO:0043531
Viun10g00512 710 Gene3D - 6 175 IPR035897 -
Viun10g00512 710 PRINTS Disease resistance protein signature 284 298 - -
Viun10g00512 710 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00512 710 PRINTS Disease resistance protein signature 378 392 - -
Viun10g00512 710 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 567 IPR044974 GO:0006952
Viun10g00512 710 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Viun10g00512 710 SUPERFAMILY "Winged helix" DNA-binding domain 414 500 IPR036390 -
Viun10g00512 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00512 Viun-Chr10 4594465 4598483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00512 188 511 WRKY Transcription Factor Family AT5G45050 35.045 5.00e-48 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00512 - - vun:114165123 794.653