Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00510 ATGGAGTTCACATCTGCTTCTTCTTCATCTTCATCATCATCATCTTCATCCTTCCTAAAATCAGAACCCCATTTCATATACGACGTGTTCATCAACCATTCGGGAGAAAACATCAGTAGAAAGTTTGTTTCTCATCTCCATTCTGCCTTTTTAGAAGCTCAAGTCAAAACTTTGATTAACGAGGAGAATTTGCAAGAGGGAATGAAGCTGGAAGAACACATGCGAGCAATAGCAGGCTGTAAGATTGCAATAATTGTTTTCTCCAAAACGTACGCTGAATCGACCAACTGTCTTCTTGAGCTTGAAAAAATCATTGCATGCCACCAAACTTTTGGCCAAACTATTTTGCCCATATTTTACGAGATTGACCCATTGGATGTACGTGATCAGAAGGATGATTTTGGAAAATCGTTGGAAGAAACTGCACACAAAAGTTATTCAGGAGAACAAGTGGAACATGCTTTGTCCAGCTGGACCCGTTCGCTCACAACAGTTGCTAGTATCACTGGTTTGGATGTCAGAGATTTCAGGCATGATGCTCAACTTGTGGAAATAACCGTTAGACGCGTTAAGACATTGTTGGACTATGCAGAGTTGTCTACTACCCTATTTCCTGTTGGATTAGAGTCACACGTGGAAAAGGTGATTGGATGTATTGAAAAACATTCCACTAAATTGTGTATGATTGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCTTAGCCAAAGCCATCTACAATCGAATTTATCGTACATTCATTGGCAAGAGTTTTAGTGAAAATATTAGAGAAGCTTGTTCTAGAGTAAACAGAAGCTACGTTCATTTGCAAGAAAATCTTCTTTATGATGTCCTAAAATCCAAGTTGGAGGTGGAAAGCGTTGGGATGGGAAGAACTATGATCCAGAATAGACTTTCTCGAAAAAAGTTGCTCATTGTGGTTGATGATGTGAATGAGTTTGGGCAATTAGAAAACCTATGCCTGAATCGTGAATGGTTCGGTCGAGGAACTGTGATAATCATCACAACCAGAGATGTTCACCTACTGAATCGACTTAAAGTTAATTATATTTACAAAATGGAAGGTATGAACGAAAATGATTCCCTTGAGCTTTTGAGTTGGCATGCCTTTGTAGCAGCAAAACCAAGAAAAGAATTGAATGAACTTGCAAGAAACGTAGTAGCTTATTGTGGAGGACTTCCACTAGCTCTTAAGGTCCTTGGTTCCTTTTTATGTGGTAGGAGAAAAAAAGAGTGGGAAAGCATACCGTCAAAACTAAACCTAATTCCCATTGATCAATTTCAAGAGAAATTGAAAATAAGTTTTGACGGCTTATATAATGAAATGGAAAAGGATATATTTCTTGATGTATGTTGCTTCTTTATTGGTAAAGAGAGAGGCTATGTTACAGAAATTCTAAATGCCTGTGGACTACGTGCTGATATGGGAATAAAAGTTCTCATAGAGCGGGCTCTTATAAGAGTTAAACGGAACAACAAACTTGAAATGCATCCTTTGATACGAGACATGGGAAGAGAAATCATTCGTCAAAGAAGCCCAACAGAACTCGGGGGAAGGAGTCGATTATGGTTTCATGAAGATCTAAAAGATATACTTGAAAAAAATACTGGGACAAAAGCTATCGAAGGATTGTCCTTGAAACTGCCTTCAATCAGCCAAGATTTCTTCGAATGTCATGCTTTTAAGGAAATGAAGAGATTAAGGATATTAGAACTGGATCATGTACGACTTACTGGAAATTATAGGTACCTTTCTAAACAACTGAGATGGATTTGTTGGAAAGGGTTTCCTTCTAAATACATTCCAAACAACTTTTACATGAAAAATGTAATTGCAATTGATTTCAAACATAGTCATCTTCAACCCGTCTGGCAACAACCCAAGGTTTTAAAGTGGTTAAAATTCCTTAATCTTAGTCACTCCAAATACTTGAGAGAAACACCTGACTTTTCAACACTACCAAGTCTTCAACGGCTAATTCTTAAAGATTGTCCAAGTTTGTGCAAGGTTCATCCATCCATTGGAGATCTCTATAATATTCAACTGATAAATTTGAAGGACTGCACAAGTCTAAGTAGTCTCCCCAGAGAGATATATAAGTTGAAATCTTTAACAACTTTCATCCTCTCTGGTTGTTTCAAGATTCACATATTAGAAGAAGATATACTGCAGATGGAATCCTTGATAACTCTGGTTACTGAAAATATAACTGTGAAACAAGTGCCCTGTTCAATTGTAAACTCAAAAAGCATTGGATATATATCCCTGCGTGGATTTGAAGGATTTCCACCTAATATTTTTCCCTCAATCATTCGATCTTGGATGTCATCAACAATGAATCACCAATCTTATTTTAGTCCGTTTTGCATGGATACGCATAATTGGCGTGACTTTGCACCATTGTGTAGCAGCCTTGCAAATATTCGAAGTGTTTTGCTTCAATGTGACACAATGTTTCAACTATCCGAGCAAGTCAAAAAAATTGTTGTCGAATACAGTGTAAATTTTACAGAGCCAAGAATTTCAAATCATCAATTGAGGTTTTCTTTGATTGCTGTTCGAAGATACAATCAATTTCTCAACTCTCTTAGAGATAGCATTTCTGAGGGATTGGAAAGCAGTGAGTCTTGTGATGTTTGTCTTCCACATGACAACCATCCTAACTGGTTAGCCTATATGGGTGAGGGACATTCTGTTTCTTTCACTGTGCCCGAAGATGATGACTTAAAGGGAATGGTTTTGTGTGTTGTTTATTTATCAGCCCCTGAAATCATGGCAAATGAATGTCTTCAAAGTGTCTTGGTTGTTAATTACACAAAATGCACATTGCAGATACACAATCATGGCACAATAATTTCCTTTAACGATAAAGATTGGGAGGGTATAATATCAAATTTAGGATCAGGAGATAAGGTGGAGTTTTTTGTGAGCTTTGGTCATGGATTGGTGGTCAAGAACACAGCTATCTATCTTAATATATGGTGA 3009 0.3749 MEFTSASSSSSSSSSSSFLKSEPHFIYDVFINHSGENISRKFVSHLHSAFLEAQVKTLINEENLQEGMKLEEHMRAIAGCKIAIIVFSKTYAESTNCLLELEKIIACHQTFGQTILPIFYEIDPLDVRDQKDDFGKSLEETAHKSYSGEQVEHALSSWTRSLTTVASITGLDVRDFRHDAQLVEITVRRVKTLLDYAELSTTLFPVGLESHVEKVIGCIEKHSTKLCMIGIWGMGGSGKTTLAKAIYNRIYRTFIGKSFSENIREACSRVNRSYVHLQENLLYDVLKSKLEVESVGMGRTMIQNRLSRKKLLIVVDDVNEFGQLENLCLNREWFGRGTVIIITTRDVHLLNRLKVNYIYKMEGMNENDSLELLSWHAFVAAKPRKELNELARNVVAYCGGLPLALKVLGSFLCGRRKKEWESIPSKLNLIPIDQFQEKLKISFDGLYNEMEKDIFLDVCCFFIGKERGYVTEILNACGLRADMGIKVLIERALIRVKRNNKLEMHPLIRDMGREIIRQRSPTELGGRSRLWFHEDLKDILEKNTGTKAIEGLSLKLPSISQDFFECHAFKEMKRLRILELDHVRLTGNYRYLSKQLRWICWKGFPSKYIPNNFYMKNVIAIDFKHSHLQPVWQQPKVLKWLKFLNLSHSKYLRETPDFSTLPSLQRLILKDCPSLCKVHPSIGDLYNIQLINLKDCTSLSSLPREIYKLKSLTTFILSGCFKIHILEEDILQMESLITLVTENITVKQVPCSIVNSKSIGYISLRGFEGFPPNIFPSIIRSWMSSTMNHQSYFSPFCMDTHNWRDFAPLCSSLANIRSVLLQCDTMFQLSEQVKKIVVEYSVNFTEPRISNHQLRFSLIAVRRYNQFLNSLRDSISEGLESSESCDVCLPHDNHPNWLAYMGEGHSVSFTVPEDDDLKGMVLCVVYLSAPEIMANECLQSVLVVNYTKCTLQIHNHGTIISFNDKDWEGIISNLGSGDKVEFFVSFGHGLVVKNTAIYLNIW 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00510 1002 Gene3D Ribonuclease Inhibitor 498 795 IPR032675 -
Viun10g00510 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 457 IPR027417 -
Viun10g00510 1002 Gene3D - 193 358 IPR027417 -
Viun10g00510 1002 PRINTS Disease resistance protein signature 228 243 - -
Viun10g00510 1002 PRINTS Disease resistance protein signature 305 319 - -
Viun10g00510 1002 PRINTS Disease resistance protein signature 398 412 - -
Viun10g00510 1002 PRINTS Disease resistance protein signature 659 675 - -
Viun10g00510 1002 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 170 IPR035897 -
Viun10g00510 1002 SUPERFAMILY "Winged helix" DNA-binding domain 435 540 IPR036390 -
Viun10g00510 1002 SMART till_3 26 168 IPR000157 GO:0007165
Viun10g00510 1002 ProSiteProfiles TIR domain profile. 25 194 IPR000157 GO:0007165
Viun10g00510 1002 Pfam TIR domain 27 164 IPR000157 GO:0007165
Viun10g00510 1002 Pfam NB-ARC domain 209 433 IPR002182 GO:0043531
Viun10g00510 1002 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 764 IPR044974 GO:0006952
Viun10g00510 1002 Gene3D - 20 192 IPR035897 -
Viun10g00510 1002 Gene3D - 363 447 IPR042197 -
Viun10g00510 1002 SUPERFAMILY L domain-like 554 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00510 Viun-Chr10 4569993 4579179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00510 206 703 WRKY Transcription Factor Family AT5G45050 32.386 1.63e-72 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00510 - - pvu:PHAVU_010G027900g 1388.24