Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00500 ATGACCGAACGTAGCTCTGGTACCACTGATAAATTTGCATTATACTTTAATAAAGATATTGCACAAGATAATAAAAAAAAATGGCTTCATTTTAAAGAAAAACTTCTTTCAGATGTCCTAAAACCAAAGGTAGAGGTACGTAACATTGAGAAGGGAAGAAATATTCGAGAAAGGCATTTTCGGAAAAGGGTGCTCATTGTACTTGACAATGTGAATGACCATTCTCTATTAATAAACCTATCGGATAGTCTTCTGTGGTTTGATAAAGGAACTGTAATAATAATTACAACTAAGCATGAACAACTTTTGAAGACACATGATGTTAATGCTGTTTTTCGGATAAATCTATTGAACGCAAAAGAGTCTCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACCATGACCTTGCAAAAGCAATAGTTACTCACTGTGGAGGACTACCTCTGGCTCTTGAAGTCATTGGAACTTATTTATATGAAAGGACGAAAGAAGAATGGCATAGAGTACTGTTCAAATTAGGGAAAACTCCCCAGCATGACGTTCTACCAGTATTGAAAATATGTTTCGAAGGTTTACCTAATCAAATTGAAAGAAATTTATTCCTTGATATATATTGTTTCTTTGTTGGTAAAGATAGAGCCTATGTTACAAAGATCCTTAATGGTTGTGGGGTAGACGCTGATAGTGGAATAGGAATTCTCATAGAACGTAGCCTCATAATAGTTAAAAAGAACAACAAGTTTGGATTGCATCCTTTGCTAAGAGAAATGGCAAGAGAAATTATTGGCGAAATTACTTCAGGAATGGAAGCTAAGAAGACCAGTCGACTATGGTTTGATATGGATGCAGATTATGTACTGTTAGAGCATATTCTATTTTCATCACAGGAAAAAAAATTCATTCAGAGATTCCCTCCGAAATGGTTTCCAACTGTAAAAGATTTCTTCGAACGTGATTATTTAGAGGTAAGAGACGCAATAAGAAGGATGAAACTCGGTGGACATTGTGAGTACCGCTCTAAGGAACTGGGATTGATTAGGTTGGAAAAGTTTTCTTCAGAATACCATCCTATTGGATTTCAACATGATGCAATAGCCATTGATTTAAAACACCGTCTTCCTCGACTCGTCTGGAAAGAACCCCAGGTTTTGGCATGA 1179 0.3605 MTERSSGTTDKFALYFNKDIAQDNKKKWLHFKEKLLSDVLKPKVEVRNIEKGRNIRERHFRKRVLIVLDNVNDHSLLINLSDSLLWFDKGTVIIITTKHEQLLKTHDVNAVFRINLLNAKESLELLSWHAFREAKPKEEYHDLAKAIVTHCGGLPLALEVIGTYLYERTKEEWHRVLFKLGKTPQHDVLPVLKICFEGLPNQIERNLFLDIYCFFVGKDRAYVTKILNGCGVDADSGIGILIERSLIIVKKNNKFGLHPLLREMAREIIGEITSGMEAKKTSRLWFDMDADYVLLEHILFSSQEKKFIQRFPPKWFPTVKDFFERDYLEVRDAIRRMKLGGHCEYRSKELGLIRLEKFSSEYHPIGFQHDAIAIDLKHRLPRLVWKEPQVLA 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00500 392 Gene3D - 6 111 IPR027417 -
Viun10g00500 392 Pfam NB-ARC domain 51 183 IPR002182 GO:0043531
Viun10g00500 392 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 211 IPR027417 -
Viun10g00500 392 PRINTS Disease resistance protein signature 151 165 - -
Viun10g00500 392 PRINTS Disease resistance protein signature 58 72 - -
Viun10g00500 392 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 369 IPR044974 GO:0006952
Viun10g00500 392 Gene3D - 116 200 IPR042197 -
Viun10g00500 392 SUPERFAMILY "Winged helix" DNA-binding domain 187 273 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00500 Viun-Chr10 4494105 4497533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00500 55 306 WRKY Transcription Factor Family AT5G45050 31.621 2.23e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00500 - - vun:114165120 797.349