Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00498 ATGTTCTGCCCGTATATTACGAAATTCAGCCATCTGATGTTCGTCTTCAAAAGGGTGATTTTGGAAAAACCCTCAAAGCAACTGCACAAAAATCATTTTCAGCACAACAAATGGAGCATGGCATGTCCAGGTGGAACCACGCACTCAGCAAAACTGCAGATTTTTTTGGATGGGATGAGAGCAATTACAGATCTCCTAAAAACAAAGCTGGAGATACATAAAGTTGAGATGGGAAGACGTATGATTGGGGAAAGACTTTATGGGAAAAAGGTGCTTATTGTACTTGACGATGTGAATGAGTATGGGCCATTGGACCTATGGGAAAGTAGTGCATGGTTCGGTGAAGGAACTGTAATAATCATTACAACAACAGATGCACGCCTACTGAGGATATATCAAGTTGATTATATTTTTCAGATGAATGTAATGAACCCAAACAAGTCCCTTGAGCTTTTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAAAGGAATACCATTTCCTTGCAAGAAGAGTAGTTGCTTATTGTGGAGGACTACCTCTACTTCTTGAAGTCATCGGAAGTTGTTTGTATGAAAGGACGAAGGAAGAATGGAATAGATTATTGTTGCAATTAGACAACAGTGCCCAGCACGAAGTTGACCAGATATTGAAAATAAGCTACGAAGATTTACTTAATCAAATGGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTATTGGTAAATGCAAATTTTATGTTACCAAGATCCTAAATGACTGTGGAGTAGACCCTGATAGTGGAATAAGAGTTCTCATAAAGCGTAACCTCGTAAAAATTAGAAAGAACAACAAAGTTGGAATGCATCCTTTGCTACGACAAATGGGAAGAGAAATTAGTCACGAAATTTTAAGAAAGGAACCTGAGAAAATCAGTGGGTTGTGGCTTGATGAGGATATGGAACATGCACTGTCACGGAATAGTCAGACAAATGTCATTCAAAGATTTTCGAGAAGACTGGTGAATCTTGCCGGATTTTCTTGGTCCCTTTGTGAGAAACTAAGATGGGTCAGTTTGAAAGGGTTTTCTTCACAATACCTACCTAACGACTTTTATTTGCGTGATGCAATAGGGATTGATTTAAAACACAGTCTTCTTCGACTGGTCTGGAAAGAATCCCAGGTCTTGGCGCGGCTAAAAGTCCTTAATCTTAGTCATTCCATTTACTTGACAGAAACCCCTGACTTTTCAAGACTACCTGCTCTCGAACAACTCATTCTCAAAAATTGCCAAAGTTTGCGTCAAGTACACCAGTCTATTGGATTTCTCTACAATCTTACATTACTAAATTTGAAGGACTGTACAGGCCTAACCAATCTCCCCAGAGAGATATATATGTTGAAATCTTTAAAAGCTCTCGTTCTTTCTGGTTGTTCCAAAATTGTCCTACTCGAGAAAGATATAGTGCAAATGGAATCCTTGATAACCCTAATTTCTGAAAATACAGTTTTGAAACAAGTTCCTTTTTCGATTGCAAGTTCAAAAAGCATTGGATATATATCCTTATGTGGATTAGAGGAACGGTCAAATAATCTTTTTCCTTCTATCATTCGGTCTCGGATGTCACCAACAACGAATCCCCTATCCTATATTCATACTTTCAGTGATACGGAGGACAATAGTTGGGATGATGTTGTACCATTTTTTAGCAGTCTTGCAATTCTTCGAAGTGTTTTGGTGCAATGTGACCCCGAGTTTCAACTATCTGTACAACTAAAAGCGATACTGATGGATTATTGTGTAAATATTACAAAATCAAGAATTTCAAAGCATCACTTCAGGTCTTGTTTGATCGGTGTTGGCAGATACGAAGAATTCTTCAATACTGTCAGCGATGGCATATCTGAGGTATTGGCAAGTAGTGGGTCATGTGATGTTTGTCTCCCAGGTGACAATTATCCTTATTGGTCGGCCCATAGGGGTGAGGGACATTCTGTGTCTTTCACTGTGCCTCGGGATTGTGTGATGAAGGGCTTGATTTTATGTGTTGTTTGTTTATCAACTCCCGAAATCATTGAACCTGAACTTACTACTGTCTTAATTGTAAATTACACGAGGTGCACATTACAGATACACAACCATGGCACAGTAATTTCCTTTAATGACGAAGATTGGGATCACATAGTATCAAATTTAGGATCTGGAGACAGAGTGGAGATTTTTGTGTCTTCTGCTTATGGATTGGTGGTTAAGGAGACAGCTGTTTATTTGATGTATGGTGAGCCAAAGAAAAATTCCCTCATTAGATCCATAAAGAAAATTATAATGTGA 2316 0.3834 MFCPYITKFSHLMFVFKRVILEKPSKQLHKNHFQHNKWSMACPGGTTHSAKLQIFLDGMRAITDLLKTKLEIHKVEMGRRMIGERLYGKKVLIVLDDVNEYGPLDLWESSAWFGEGTVIIITTTDARLLRIYQVDYIFQMNVMNPNKSLELFSWHAFREAKPKKEYHFLARRVVAYCGGLPLLLEVIGSCLYERTKEEWNRLLLQLDNSAQHEVDQILKISYEDLLNQMEKDLFLDVCCFFIGKCKFYVTKILNDCGVDPDSGIRVLIKRNLVKIRKNNKVGMHPLLRQMGREISHEILRKEPEKISGLWLDEDMEHALSRNSQTNVIQRFSRRLVNLAGFSWSLCEKLRWVSLKGFSSQYLPNDFYLRDAIGIDLKHSLLRLVWKESQVLARLKVLNLSHSIYLTETPDFSRLPALEQLILKNCQSLRQVHQSIGFLYNLTLLNLKDCTGLTNLPREIYMLKSLKALVLSGCSKIVLLEKDIVQMESLITLISENTVLKQVPFSIASSKSIGYISLCGLEERSNNLFPSIIRSRMSPTTNPLSYIHTFSDTEDNSWDDVVPFFSSLAILRSVLVQCDPEFQLSVQLKAILMDYCVNITKSRISKHHFRSCLIGVGRYEEFFNTVSDGISEVLASSGSCDVCLPGDNYPYWSAHRGEGHSVSFTVPRDCVMKGLILCVVCLSTPEIIEPELTTVLIVNYTRCTLQIHNHGTVISFNDEDWDHIVSNLGSGDRVEIFVSSAYGLVVKETAVYLMYGEPKKNSLIRSIKKIIM 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00498 771 Gene3D Ribonuclease Inhibitor 318 512 IPR032675 -
Viun10g00498 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 236 IPR027417 -
Viun10g00498 771 PRINTS Disease resistance protein signature 85 99 - -
Viun10g00498 771 PRINTS Disease resistance protein signature 177 191 - -
Viun10g00498 771 PRINTS Disease resistance protein signature 460 476 - -
Viun10g00498 771 Pfam NB-ARC domain 69 227 IPR002182 GO:0043531
Viun10g00498 771 Gene3D - 143 233 IPR042197 -
Viun10g00498 771 SUPERFAMILY "Winged helix" DNA-binding domain 213 317 IPR036390 -
Viun10g00498 771 SUPERFAMILY L domain-like 317 598 - -
Viun10g00498 771 Gene3D - 19 137 IPR027417 -
Viun10g00498 771 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 65 500 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00498 Viun-Chr10 4455637 4459965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00498 81 495 WRKY Transcription Factor Family AT5G45050 28.421 9.73e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00498 - - pvu:PHAVU_010G029600g 885.945