Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00488 ATGGAGTTCGCATCTTCATCATCATCATCATCTTCGTCCTTCTTAAAATCAGAACCCCATTTCATATACGACGTGTTCATAAACTTTGGGGCAAAAGACATCGGTAGAAGGTTCGTTTCTCATCTCCATTCCGCCCTTTTACAAGCTGAAGTAAAAACATTGATTAACGAGGAGAATCCGCAAGAGGGAATGAATCTGGAAGAACACCTGCGAGCAATAGCCGGCACCAAGATCACAATAATTGTTTTCACCAAAACATACACCGAATCTACCAGGTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACCAAACTTTTGGCCAAATAGTTCTGCCTGTATTCTACGAGATTGACCAATTGGATGTACGTTATCAGGAGGATGATTTTGGAAAAGCGTTGGAAGAAGCTGTATACAAAAGCTATTCAGGAGAACAACTGGAACATGCGTTGTCCAGGTGGACTGATGCACTCACCACAGCCGCAGGTATTGATGGTTGGGATCTCAGAGATTTCAGGCATGATGCTCAACTTGTGGATGTGATTGTTAGTCGCGTTCAGACATTGTTGGACTATGCAGAGTTGGGTATTACCCGATTTCCTGTTGGATTACAGTCGCAAGTGGAAAAGGTGATTGAATGTATCGAAAATCATTCCACCAAAGTGTGTGTGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACTATAGCCAAAGCTATCTATAATCGAATTTATCGTCTATTCATTGGTAAGTGCTTTATTGAAAATATTGAAGAAGTTCGGAATCGAGTATACAGAACGAATGTTCATTTGCAAGAAAAACTTATTAATAATGTCCTAAAAAGCGAGGTGGTGGTGACAGGCCTTGGGATGGGAAAACTCGTAATCAAGACCGAACTTTCCCGGAAAAAGTTGCTCATTGTACTTGATGATGTGAATAAGTTTGGCCAATTAAAACACCTTTGCGGGAATCCCGAATGGTTCGGTCAAGGAACGGTGATAATCATTACAACCAGAGATGTTAGCCTGCTGAACCGACTCAAAGTTAATTATGTTTATCAAATGAATGGTATGAACGATAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTGGAGAAGAAAAACCAAGAAAAGAATTGAACGAACTTGCAAGAAACATAGTTGCTTATTGTGGAGGACTACCACTAGCCCTTAAGGTCTTTGGTGGTATGACAATGAAAGAGTGGGAAAGCGTATCATCAAAACTACCAGTAATTCCCTTTGCCCAAGTTAAAGAGAAATTGAAAATAAGCTTTGACGGTTTAGGTGACATGGAAAAGGATATATTTCTTGATGTATGCTGCTTTTTTATTGGTAAAGAGAGAGGTTATGTCACAGAGATACTAAATGGTTGTGGACTACATGCTACTATTGGAATAACAACTCTCATAGAACGTAATCTCATAAAAGTTGAAAGGAACAACAAACTTGAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAAATTATTTTCCGAAGATGGCCAGAGGAACCGGGAAAAAGGAGTAGATTATGGTTTCATGAAGATGTAAAAGATGTCCTAGAAAAAAACACTGGAACAAAAGCTACTCAGGGATTGTCCCTAAAACTGCCTTCAACCAATAGAAATTGCTTCGAGGCTCATGCTTTCAAGAAAATGAAGAGATTAAGACTGCTACAACTGGATCATGTACAACTTACTGGAGATTATGGGCACCTTTCTAAACAACTGAGATTGATTTGTTGGCAAGGGTTTCATTCTAAATACATTCCAAACAACTTTCATATGGAAAATGTAATTGCAATGGATTTGAAGCATAGTCATCTTCAACTCGTCTGGAAACAACCGACATGGAAATCACCACTCTGGAAACAACCCCAGGTTTTAGAGCACTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGACTTTTCAAGACTACCAAATCTTCGACGGCTCATTCTAAAAGATTGCCCAAGTTTATGTAAGATACACTCATCTATTGGAGATCTATGCAATCTACTACTGATAAATTTGAAGGACTGCACAAGTCTAAGCAGTCTCCCCAGAGAGTTATATAATTTAAAATCTTTAAGAACTTTCATCCTCACCGGTTGTTTCAAGATTGATATATTAGAAGAAGATATAGTGCAAATGGAATCCTTGATAACTTTAGTTACTGAAAATACAGCTGTGAAACATGTGCCCTGTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTTTGTGGATTGGAAGGATTGTCACTTAACCTTTTTCCTTCTTTGATTCGATCTTGGATGCCACCAACAATGAATCCACAGTCTTATATTAGTTTGTATTGCATGGATATGGAGAATAATAACTGGCACGACCTTGCGCCATTGTTTGGCGGCCTTGGAAATATTCGAAGCGTTCTAGTTCAATGTGACACGGAGTTTCAACTATTTAAGCAAGTAAAAACACTTCTTGTCGAATACGACGACAATTTTACAGAGTCAAGAATTTCAAAGCATCAGTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTATGCAACACACTCAGCAATAGCGTTTCTGAGGGATTGGCAAGCTGTGAGTCTTGCGATGTTTGTCTTCCAGGTGACAACCATCCTTACTGGCTCGCCCATATCGGTGAGGGACGTTCTGTTTCTTTCACTGTGCCTCAAGATCGTGAGTTGAAGGGAATGGTTTTGTGTGTTGTTTATTTATCAGCCCCTGAATTCATGGCAAATGAATGTTTTCAAAGAGTATTGGTTGTTAATTACACAAAGTGCACGTTGCAGATACACAATCATGGCACAGTAATTTCCTTTAACGATAGAGATTGGGAGGGTATAATATCAAATTTAGGATCAGGAGATAAGGTGGAGTTTTTTGTGAGTTTTGGTCATGGATTGGTGGTCAAGAACACAGCTATCTATCTTAATATATGGTGA 3018 0.3893 MEFASSSSSSSSSFLKSEPHFIYDVFINFGAKDIGRRFVSHLHSALLQAEVKTLINEENPQEGMNLEEHLRAIAGTKITIIVFTKTYTESTRCLLELEKIIECHQTFGQIVLPVFYEIDQLDVRYQEDDFGKALEEAVYKSYSGEQLEHALSRWTDALTTAAGIDGWDLRDFRHDAQLVDVIVSRVQTLLDYAELGITRFPVGLQSQVEKVIECIENHSTKVCVIGIWGMGGSGKTTIAKAIYNRIYRLFIGKCFIENIEEVRNRVYRTNVHLQEKLINNVLKSEVVVTGLGMGKLVIKTELSRKKLLIVLDDVNKFGQLKHLCGNPEWFGQGTVIIITTRDVSLLNRLKVNYVYQMNGMNDNDSLELLSWHAFGEEKPRKELNELARNIVAYCGGLPLALKVFGGMTMKEWESVSSKLPVIPFAQVKEKLKISFDGLGDMEKDIFLDVCCFFIGKERGYVTEILNGCGLHATIGITTLIERNLIKVERNNKLEMHPLFRDMGREIIFRRWPEEPGKRSRLWFHEDVKDVLEKNTGTKATQGLSLKLPSTNRNCFEAHAFKKMKRLRLLQLDHVQLTGDYGHLSKQLRLICWQGFHSKYIPNNFHMENVIAMDLKHSHLQLVWKQPTWKSPLWKQPQVLEHLKFLNLSHSKYLRETPDFSRLPNLRRLILKDCPSLCKIHSSIGDLCNLLLINLKDCTSLSSLPRELYNLKSLRTFILTGCFKIDILEEDIVQMESLITLVTENTAVKHVPCSIVSSKSIGYISLCGLEGLSLNLFPSLIRSWMPPTMNPQSYISLYCMDMENNNWHDLAPLFGGLGNIRSVLVQCDTEFQLFKQVKTLLVEYDDNFTESRISKHQLRFSLIGVGSYNELCNTLSNSVSEGLASCESCDVCLPGDNHPYWLAHIGEGRSVSFTVPQDRELKGMVLCVVYLSAPEFMANECFQRVLVVNYTKCTLQIHNHGTVISFNDRDWEGIISNLGSGDKVEFFVSFGHGLVVKNTAIYLNIW 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00488 1005 Gene3D - 359 439 IPR042197 -
Viun10g00488 1005 Gene3D Ribonuclease Inhibitor 537 848 IPR032675 -
Viun10g00488 1005 Pfam NB-ARC domain 205 420 IPR002182 GO:0043531
Viun10g00488 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 448 IPR027417 -
Viun10g00488 1005 Gene3D - 16 192 IPR035897 -
Viun10g00488 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 745 IPR044974 GO:0006952
Viun10g00488 1005 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 167 IPR035897 -
Viun10g00488 1005 Gene3D - 194 354 IPR027417 -
Viun10g00488 1005 SUPERFAMILY "Winged helix" DNA-binding domain 427 531 IPR036390 -
Viun10g00488 1005 Pfam TIR domain 23 186 IPR000157 GO:0007165
Viun10g00488 1005 SUPERFAMILY L domain-like 509 822 - -
Viun10g00488 1005 PRINTS Disease resistance protein signature 301 315 - -
Viun10g00488 1005 PRINTS Disease resistance protein signature 637 653 - -
Viun10g00488 1005 PRINTS Disease resistance protein signature 224 239 - -
Viun10g00488 1005 PRINTS Disease resistance protein signature 394 408 - -
Viun10g00488 1005 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Viun10g00488 1005 SMART till_3 22 164 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00488 Viun-Chr10 4430211 4434261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00488 23 754 WRKY Transcription Factor Family AT4G12020 28.648 3.04e-71 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00488 - - pvu:PHAVU_010G027900g 1393.64