Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00486 ATGGAGTTCGCATCTTCATCATCATCATCATCTTCGTCCTTCTTAAAATCAGAACCCCATTTCATATACGACGTGTTCATAAACTTTGGGGCAAAAGACATCGGTAGAAGGTTCGTTTCTCATCTCCATTCCGCCCTTTTACAAGCTGAAGTAAAAACATTGATTAACGAGGAGAATCCGCAAGAGGGAATGAATCTGGAAGAACACCTGCGAGCAATAGCCGGCACCAAGATCACAATAATTGTTTTCACCAAAACATACACCGAATCTACCAGGTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACCAAACTTTTGGCCAAATAGTTCTGCCTGTATTCTACGAGATTGACCAATTGGATGTACGTTATCAGGAGGATGATTTTGGAAAAGCGTTGGAAGAAGCTGTATACAAAAGCTATTCAGGAGAACAACTGGAACATGCGTTGTCCAGGTGGACTGATGCACTCACCACAGCCGCAGGTATTGATGGTTGGGATCTCAGAGATTTCAGGCATGATGCTCAACTTGTGGATGTGATTGTTAGTCGCGTTCAGACATTGTTGGACTATGCAGAGTTGGGTATTACCCGATTTCCTGTTGGATTACAGTCGCAAGTGGAAAAGGTGATTGAATGTATCGAAAATCATTCCACCAAAGTGTGTGTGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACTATAGCCAAAGCTATCTATAATCGAATTTATCGTCTATTCATTGGTAAGTGCTTTATTGAAAATATTGAAGAAGTTCGGAATCGAGTATACAGAACGAATGTTCATTTGCAAGAAAAACTTATTAATAATGTCCTAAAAAGCGAGGTGGTGGTGACAGGCCTTGGGATGGGAAAACTCGTAATCAAGACCGAACTTTCCCGGAAAAAGTTGCTCATTGTACTTGATGATGTGAATAAGTTTGGCCAATTAAAACACCTTTGCGGGAATCCCGAATGGTTCGGTCAAGGAACGGTGATAATCATTACAACCAGAGATGTTAGCCTGCTGAACCGACTCAAAGTTAATTATGTTTATCAAATGAATGGTATGAACGATAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTGGAGAAGAAAAACCAAGAAAAGAATTGAACGAACTTGCAAGAAACATAGTTGCTTATTGTGGAGGACTACCACTAGCCCTTAAGGTCTTTGGTGGTATGACAATGAAAGAGTGGGAAAGCGTATCATCAAAACTACCAGTAATTCCCTTTGCCCAAGTTAAAGAGAAATTGAAAATAAGCTTTGACGGTTTAGGTGACATGGAAAAGGATATATTTCTTGATGTATGCTGCTTTTTTATTGGTAAAGAGAGAGGTTATGTCACAGAGATACTAAATGGTTGTGGACTACATGCTACTATTGGAATAACAACTCTCATAGAACGTAATCTCATAAAAGTTGAAAGGAACAACAAACTTGAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAAATTATTTTCCGAAGATGGCCAGAGGAACCGGGAAAAAGGAGTAGATTATGGTTTCATGAAGATGTAAAAGATGTCCTAGAAAAAAACACTGGAACAAAAGCTACTCAGGGATTGTCCCTAAAACTGCCTTCAACCAATAGAAATTGCTTCGAGGCTCATGCTTTCAAGAAAATGAAGAGATTAAGACTGCTACAACTGGATCATGTACAACTTACTGGAGATTATGGGCACCTTTCTAAACAACTGAGATTGATTTGTTGGCAAGGGTTTCATTCTAAATACATTCCAAACAACTTTCATATGGAAAATGTAATTGCAATGGATTTGAAGCATAGTCATCTTCAACTCGTCTGGAAACAACCGACATGGAAATCACCACTCTGGAAACAACCCCAGGTTTTAGAGCACTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGACTTTTCAAGACTACCAAATCTTCGACGGCTCATTCTAAAAGATTGCCCAAGTTTATGTAAGATACACTCATCTATTGGAGATCTATGCAATCTACTACTGATAAATTTGAAGGACTGCACAAGTCTAAGCAGTCTCCCCAGAGAGTTATATAATTTAAAATCTTTAAGAACTTTCATCCTCACCGGTTGTTTCAAGATTGATATATTAGAAGAAGATATAGTGCAAATGGAATCCTTGATAACTTTAGTTACTGAAAATACAGCTGTGAAACATGTGCCCTGTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTTTGTGGATTGGAAGGATTGTCACTTAACCTTTTTCCTTCTTTGATTCGATCTTGGATGCCACCAACAATGAATCCACAGTCTTATATTAGTTTGTATTGCATGGATATGGAGAATAATAACTGGCACGACCTTGCGCCATTGTTTGGCGGCCTTGGAAATATTCGAAGCGTTCTAGTTCAATGTGACACGGAGTTTCAACTATTTAAGCAAGTAAAAACACTTCTTGTCGAATACGACGACAATTTTACAGAGTCAAGAATTTCAAAGCATCAGTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTATGCAACACACTCAGCAATAGCGTTTCTGAGGTATTTGAAAGCAGTGAATCATGTCATATTTCTCTTTCAAGTGGCAATGATCCTTATTGGTTGGCGCATAGAGGCGAAGGGAATGACTTTATGTGTCGTTTATTTATCACCTCCTAA 2757 0.3867 MEFASSSSSSSSSFLKSEPHFIYDVFINFGAKDIGRRFVSHLHSALLQAEVKTLINEENPQEGMNLEEHLRAIAGTKITIIVFTKTYTESTRCLLELEKIIECHQTFGQIVLPVFYEIDQLDVRYQEDDFGKALEEAVYKSYSGEQLEHALSRWTDALTTAAGIDGWDLRDFRHDAQLVDVIVSRVQTLLDYAELGITRFPVGLQSQVEKVIECIENHSTKVCVIGIWGMGGSGKTTIAKAIYNRIYRLFIGKCFIENIEEVRNRVYRTNVHLQEKLINNVLKSEVVVTGLGMGKLVIKTELSRKKLLIVLDDVNKFGQLKHLCGNPEWFGQGTVIIITTRDVSLLNRLKVNYVYQMNGMNDNDSLELLSWHAFGEEKPRKELNELARNIVAYCGGLPLALKVFGGMTMKEWESVSSKLPVIPFAQVKEKLKISFDGLGDMEKDIFLDVCCFFIGKERGYVTEILNGCGLHATIGITTLIERNLIKVERNNKLEMHPLFRDMGREIIFRRWPEEPGKRSRLWFHEDVKDVLEKNTGTKATQGLSLKLPSTNRNCFEAHAFKKMKRLRLLQLDHVQLTGDYGHLSKQLRLICWQGFHSKYIPNNFHMENVIAMDLKHSHLQLVWKQPTWKSPLWKQPQVLEHLKFLNLSHSKYLRETPDFSRLPNLRRLILKDCPSLCKIHSSIGDLCNLLLINLKDCTSLSSLPRELYNLKSLRTFILTGCFKIDILEEDIVQMESLITLVTENTAVKHVPCSIVSSKSIGYISLCGLEGLSLNLFPSLIRSWMPPTMNPQSYISLYCMDMENNNWHDLAPLFGGLGNIRSVLVQCDTEFQLFKQVKTLLVEYDDNFTESRISKHQLRFSLIGVGSYNELCNTLSNSVSEVFESSESCHISLSSGNDPYWLAHRGEGNDFMCRLFITS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00486 918 Gene3D - 194 354 IPR027417 -
Viun10g00486 918 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 167 IPR035897 -
Viun10g00486 918 SUPERFAMILY "Winged helix" DNA-binding domain 427 531 IPR036390 -
Viun10g00486 918 PRINTS Disease resistance protein signature 394 408 - -
Viun10g00486 918 PRINTS Disease resistance protein signature 301 315 - -
Viun10g00486 918 PRINTS Disease resistance protein signature 224 239 - -
Viun10g00486 918 PRINTS Disease resistance protein signature 637 653 - -
Viun10g00486 918 Pfam NB-ARC domain 205 420 IPR002182 GO:0043531
Viun10g00486 918 Gene3D - 359 439 IPR042197 -
Viun10g00486 918 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 745 IPR044974 GO:0006952
Viun10g00486 918 Pfam TIR domain 23 186 IPR000157 GO:0007165
Viun10g00486 918 Gene3D - 16 192 IPR035897 -
Viun10g00486 918 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Viun10g00486 918 SUPERFAMILY L domain-like 509 822 - -
Viun10g00486 918 Gene3D Ribonuclease Inhibitor 537 829 IPR032675 -
Viun10g00486 918 SMART till_3 22 164 IPR000157 GO:0007165
Viun10g00486 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00486 Viun-Chr10 4429255 4434261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00486 23 754 WRKY Transcription Factor Family AT4G12020 28.648 6.79e-72 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00486 - - pvu:PHAVU_010G027900g 1222.22