Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00485 ATGACGTCACCAGTTCCTTCCATGGAATTCGCCTCTTCAACTTCCAAACTCCCACAAATGTATGACGTGTTAATTAACTTCAATGGAGAAGACATCCGCAGGAAATTTGTTTCTCATCTTGATTCTGTCCTCTTAGCTGCTGGACTCACCACTTTCCTTCACCACCAGATCTCAGTCAACGACATGGACATCCAACAACCAATTCTCGATCTCTGTCGGATAGTAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGCCTTCATCAGCTTCATCAAATCATCAAATGGCATGAAACCTATTGTCGACATGTTCTGCCTGTATATTACGAGATTCAGCCATCTGATGTGCGTCTTCAGAAGGGAGATTTTGGAAAAGACCTCAGAGCAACTGCACAACAAACATTTTCAGCACAACAACTGGAGCATGGCATGTCAAGGTGGAGCCACGCACTCAGCAAAACTGCAGATTTTTTTGGATGGGATGTGAGCAATTACAGGAGTGATGCTGAACTAGTGGACACAATTGTTAAAAGCATTCTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAATTGGATTACAATCCCACGTGGAAGATGGGATTCAAATTATAAAAAATAAAGCCACCGGGGTTTGTAGATTAGGAATATGTGGAATTGGAGGATCCGGTAAAACCACACTTGCCAAAGCTATCTATAATCAAATTCATGGTACATTCTTGAAAAAAAGTTTTATTGAAAATATTTCAGGAGTTAGTCGAACACAAAAGTATGCTAATTTACAACAACGACTACTTTCAGATCTCCTAAAAACAAAGGTGGAGATACGTAGTGTTGAGATGGGAAGAAGTATGATTGAGGAAAGACTTTATGGGAAAAAGGTACTTATTGTACTTGACGATGTGAATGACTATTGGCCATTGGATCTATTGGAAAGTAGTGCATGGTTCGGTGAAGGAACCGTAATAATCATTACAACACGAGATGAAAGCCTATTGAGGATACATCATCAAGTTGATTCTATTTTCCGAATGAATCTAATGAACCCAAACGACTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAGGAATGTCATTTCCTCGCAAAAATGGTAGTTGATTATTGTGGAGGACTACCACTAGCTCTTGAAGTCATTGGATCTTTGTTATATGAAAGGACTAAAGAAGAATGGAATAAAGTATTGTTAAGATTAGAAAGTGTTCCCCAGTATGAAGTTCTAGAGATATTGAAAATAAGTTTCGACGGTTTACGTAATCAAATTGAAAGAAATTTATTCCTTGATATATGTCGTTTCTTTGTTGGTAAAGATAGAGTCTATGTTACAAAGATCCTAAATGGTTGTGGAGTAGACGCTGATAGTGGAATAAGAATTCTCATAGAACGTAGCCTCATAATAGTTAAAAGGAACAACAAGTTTGGATTGCATCCTCTGCTAAAAGAGATGGGAAGAGAAATTATTGGCGAAATTACTACAGGAAAGGAATCTGAGAAGGCCAGTCGACTATGGTTTGATAAGGATGAAGATTATGCACTGATAGAGCATATTCTATTTTCATCACAGGAAAAAAATGTCATTCAGAGATTCCCTCCGAAATGGTTTCTAACCGTAAGAGATTTCTTCGATCGTGATTATTTAGAGGTAAGAGACGCAATAAGCAGGATGAAACTCGGTGGACATTGTGAGTGCCGCTCTAAGGAACTGGGATGGATTATCTTGGAAAAGTTTTCTTCAGACTTCCTACCTGTTGGATTGCTACATGATGCAATAGCCATTGATTTAAAACACAGTCTTCCTCGACTCGTCTGGAAAGAACCCCAGGTTTTGGCATCACTAAAAGTCCTTAATCTTAGTCACTCCAAGTACTTGACAGAAACCCCTGACTTTTCGAGACTACCAGGTCTTGAACACCTCATTCTCAAAGATTGCCCAAGATTGTGCGAAGTGCACCCATCTATTGGAGGTCTCTGCAATCTTACACTTCTAAATTTGAAGGACTGTACAAAGATAAACAATCTTCCCAGAGAGATATATATGTTGAAATCTTTAAAAACACTCATTCTTTCTGGTTGTTCCGGGATTCACCTAATGGAAAAAGATATAGTGCAAATGGAATCCTTGATAACTCTTATTACTGAAAATAGAGTTGTGAAAGAAGTTCCTTTTTCAATTGTAAGCTCAAAAAGTATTGGATATTTATCTCTACGAGGATTTGAGGGATTATCACATAATATTTTTCCTTTTATCATTCGGTCTTGGATGTTGCCATCAATGAACCCCCTATCTTATAATCATTCCTTTTGCATGGATATGGAAGTTAATAGTTGGGATGATATTACGCCATTACTTAGAATCCTTGTCAATCTTCGAAGTATTTTGGTGCAATGTGAGACCGAGTTTCAACTATCTAAGCAAGTACAAGATATTTTGGTGGAATATGGTGTAAATATTACAGAATCACACACTTCAAAGCAGCACTTCAGGTTTTCTTTGATTGGTGTTGGAAGATGCAAGGAATTCTTTGATGGTTTCAGCGATAGCATTTCCGAGGTATTTGCAGGAAGTGAATCTTGTGATGTTTCTCTTCCAGGTGACAATAATCCTAATTGTTTGGCCCATATGGGTGAGGGATATTCTGTTTCTTTCACTGTGCCTCGGGATCGTGACATGAAGGGAATGGCTTTGTGTGTAGTTTATTTATCAACCCCTGAAATTGTGGCAACTGAATGTCTTAGAAGTGTCTTAATTGTTAATTATACAAAGTGCACATTGCATATACACAACCATGGCACGGTAATTTTCTTTAACGATAAAGATTGGGAGGGTATAATATCAAATTTAGGATCAGGAGACAAGGTTGAGATTTTCGTGATTTTTGGTCATGGATTGGTAGTGAGGAGAACAATTGTCTATCTTGTATGTGGTGAATCAAATGAGTCTTCGTCAAAGAAAAATTCCCTCATTAGATTTATAAAAAAATTGTAA 3033 0.3775 MTSPVPSMEFASSTSKLPQMYDVLINFNGEDIRRKFVSHLDSVLLAAGLTTFLHHQISVNDMDIQQPILDLCRIVIVVFTKTYSQSAWCLHQLHQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGKDLRATAQQTFSAQQLEHGMSRWSHALSKTADFFGWDVSNYRSDAELVDTIVKSILNLPVLSATKFPIGLQSHVEDGIQIIKNKATGVCRLGICGIGGSGKTTLAKAIYNQIHGTFLKKSFIENISGVSRTQKYANLQQRLLSDLLKTKVEIRSVEMGRSMIEERLYGKKVLIVLDDVNDYWPLDLLESSAWFGEGTVIIITTRDESLLRIHHQVDSIFRMNLMNPNDSLELLSWHAFREAKPKEECHFLAKMVVDYCGGLPLALEVIGSLLYERTKEEWNKVLLRLESVPQYEVLEILKISFDGLRNQIERNLFLDICRFFVGKDRVYVTKILNGCGVDADSGIRILIERSLIIVKRNNKFGLHPLLKEMGREIIGEITTGKESEKASRLWFDKDEDYALIEHILFSSQEKNVIQRFPPKWFLTVRDFFDRDYLEVRDAISRMKLGGHCECRSKELGWIILEKFSSDFLPVGLLHDAIAIDLKHSLPRLVWKEPQVLASLKVLNLSHSKYLTETPDFSRLPGLEHLILKDCPRLCEVHPSIGGLCNLTLLNLKDCTKINNLPREIYMLKSLKTLILSGCSGIHLMEKDIVQMESLITLITENRVVKEVPFSIVSSKSIGYLSLRGFEGLSHNIFPFIIRSWMLPSMNPLSYNHSFCMDMEVNSWDDITPLLRILVNLRSILVQCETEFQLSKQVQDILVEYGVNITESHTSKQHFRFSLIGVGRCKEFFDGFSDSISEVFAGSESCDVSLPGDNNPNCLAHMGEGYSVSFTVPRDRDMKGMALCVVYLSTPEIVATECLRSVLIVNYTKCTLHIHNHGTVIFFNDKDWEGIISNLGSGDKVEIFVIFGHGLVVRRTIVYLVCGESNESSSKKNSLIRFIKKL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00485 1010 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00485 1010 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 445 IPR027417 -
Viun10g00485 1010 Pfam TIR domain 21 183 IPR000157 GO:0007165
Viun10g00485 1010 Gene3D Ribonuclease Inhibitor 590 717 IPR032675 -
Viun10g00485 1010 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00485 1010 SUPERFAMILY "Winged helix" DNA-binding domain 421 523 IPR036390 -
Viun10g00485 1010 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00485 1010 Pfam NB-ARC domain 210 418 IPR002182 GO:0043531
Viun10g00485 1010 SUPERFAMILY L domain-like 588 803 - -
Viun10g00485 1010 Gene3D - 186 345 IPR027417 -
Viun10g00485 1010 Gene3D - 351 434 IPR042197 -
Viun10g00485 1010 PRINTS Disease resistance protein signature 385 399 - -
Viun10g00485 1010 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00485 1010 PRINTS Disease resistance protein signature 623 639 - -
Viun10g00485 1010 PRINTS Disease resistance protein signature 292 306 - -
Viun10g00485 1010 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 730 IPR044974 GO:0006952
Viun10g00485 1010 Gene3D - 18 185 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00485 Viun-Chr10 4413882 4418383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00485 6 753 WRKY Transcription Factor Family AT4G12020 26.808 1.96e-55 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00485 - - vun:114165123 1365.13