LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g00484	ATGGAGTTCGCTTGTTCTTCTTCATCATCATCTCCATCCTTCTTAAAATCAGAACCCCAGTTCAAATACGATGTGTTCATTAACTTTGGGGGAGAAGATATGGGTAGAAAGTTCGTTTCTCATCTCCATTATGCTCTTTTACAAGCTCAATTCAAAAATTTGATTAGCACAGAGGATGTGCAAGAGGAAATGAAGCTGGAAGAACACATGCGAGCAATAGCAAGCTCTAAGATTGCAATAATTGTTTTCTTCCCCCTACCAGTTTTTACCGGTGAAAATTTTGACCTTTGGAAACTCAAACTAAAGACATATTTTATCTCACAAAAATTGTGGGATATTGTTCAATCTGGTTATACAAAACCAGATAATATTGAGACTCTATCTGAGGAGGAACGAAAAAAGCTAGAAGATTCTGAACAAAAGGATGCCCAAGCATTGTTTGTTCTTCAACAAGCTGTGGGAGAAACTATCGCCAGGAGGATCATGGATGCAGAAACTGCAAAAAGGGCATGGGATATTTTAGAAGAAGAATTTGAAGGCAATGAACAGTCAAGTCATGCAGAAAAAGACTGTTGGCATCGTGGGAAGCCAATATGTCATTATTGCAAGAAGCCTGGTCACGTGGAGAAGTATTGTCGTAATAAAAATAAGCACCAAGCAAACTTTGCTGAAGAACATAATCAGGAGCAACGTTTATTCTATGCTAATCAAGAATCTCATAGTGGAGAAGGAAATTGGTACTTGGACAGTGGATGCAGCAATCACATGGCCAAAGATCAAAGCATCTTCAAAGACATTGATAAATCTATCAATGTCAAAGTTCGACTTGGAAATGGCGCCACAGTGGAGTCTCAAGGCAAAGGAACTGTCATGGTGGAGACAAAGAAAGGTACGAAATTCATCAAGGATGTTTTACTAGTTCCCAATCTTAAAGAAAATCTTTTAAGTATTGGCCAAATGATGGAGAATGGGTATTCTCTTCACTTTGAGAAAGATACATGCAAAATTTATGACAATAGAAGGATAGAAATTGGTGAAGTAAAAATGGAGAAGAGAAATAGAAGCTTTCCCATAAGCTTCAAACCTGGAACTAATATTGCCATGAAGGCGGAAGTTGATGACTCATGGCTTTGGATGTCTTCTCGGCAAGCAACACCGATTGCCATTCTCAACAGACAAAGCATGGAGAGCAAAAGATTTACTAGAATTAATCCACACCGATGTTTGTGGACCGATGAGGACGCCTTCACATCACAACAACAGAAATTCAAGGCCCTTGTCGATAAGCAAAGTGGAAAACAGATAAAAGTACTTAGAAGTGATCGTGGAAAGGAGTACACATCTCATGAGTTTGACAAATTCTGTGAAGATGAAGGCATAGAACGACAACTTACAGTCGCATATACTCCACAACAAAATGGTGTTTCAGAGAGAAAGAATCGCACAGTCATGGAGATGGCGAGATCAATGCTGAAGGAGAAAGGACTACCAAATACATTCTGGGCAGAAGCAGTCTACACTGCGGTCTACCTACTCAATAGATGTCCTACTAAAGCAGTTCAAGACAAAACTCCAATCGAAGCCTGGACACAGTTGCACAATCAACCGCTGAAGCAGAATATGTGGCAGCCGCTGAAGCAACAAGTCAGGCTATATGGCTTCGAAGAATACTCAAAGATATGGGAGAAAAACAAACTTGAAAAAATCATTGAATGCCGCCAAACTTTTGGACAAATAGTTCTGCCAGTAATTTACGATATTGTCCAATTGGAAGAACGTAATCGGAAGGATGATTTGGTGAAAGCATTGGAAGAAGTTGCACAAAGCAGCTATTCAGGAGAACAACTAGAACATGCGTTGTCCAGGTGGAGCCGAGCACTAACCAACGCTGCAGGCATCACTGGTTGGGATTTCAGAGATTTCAGGCACGACGCTGAATTTGTGGAGAAAATTGTTAGACGCGTTCAGACATTGCTGGACTATACAAACATGTCTATTACCGCATTTCCTGTTGGATTAGAGTCCCACGTGGAAAAAGTGATTGGATTGATTGAAGAACAATCCACTGAAGTGTGTATGATAGGGATATGGGGAATGGGAGGATCAGGTAAAACTACCTTAGCCAGGGCCATCTATAATCGAATTTATCATCCATTCATTGGTAAGAGTTTTATTGAAAATATTGGACAATTTCAAGTAAACAAAAGGCATGTTCATTTGCAAGAAAATCTTCTTTATGATGTCTTAAAATCCAAGTTCAAGGTGGAAAGCGATGGGGTGGGAAGAACTATGATCGAGACTAAACTTTCACAAAAGAAGTTGCTCATTGTGCTTGACGCTGTGGATGAGTTTGGCCAGTTAGAAAACCTATGCGGGAATCGACAATGGTTTGGTCAAGGAACTGTGATAATTGTCACAACTAGAGATGTTAAGGTGCTGAACCGACTAAAAGTTAATTATGTGCATACAATGGATGTTATGAATGAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTCAGAGAAGCAAAACCAAGAAAAGAATTCAATGAGCTTTCAAGAAACATAGTTGATTATTGTGGAGGACTACCACTTGCTCTTCAGTTCCTTGGTTCCTATTTATGTGATAGGACAAAGGAAGAGTGGGAAAGTGTATCCTCAAAACTAAAAGTAAATCCCATTAATCAAATTCAAGAGAAGTTGGAAATAAGTTTTGATGGTCTGCACGACATGGAAAAGGATATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGAGAGAGGTTATGTTACAGAAATACTAAATGCCTGTGGATTGTATGCTGATATTGGAATAACAGTTCTCATAGAACGTGGCCTCATAAAAGTTGAAAGGAACAACAAACTAGAAATGCATCCTTTGTTACGAGACATGGGAAGAGAAATTATTCGCCAAAGATGCCCAAATGAACCAAGGAAAAGGAGTCGACTATGGTTTGAGGATGATATAAAAGATGTACTGAAAAGGAATACTGGAACAAAAGCTACTCAGGGATTGTCCCTGAAACTGCATTCAACCGGCAAAGATTACTTTGAGGCTCATGCTTTCAAGGAAATGAAGAGACTAAGACTTCTACAACTGCATCATGTACAACTTACCGGAGATTATGAGTACCTTTCTAAACAACTGAGATGGATTTGTTGGAAAGGGTTTCCTTTAAAATACATACCAAACAACTTTCATATGGAAAATGTAATTGCAATTAATTTAAAACATAGTTATCTTCAACTCGTCTGGCAAGAAACACCGGACTTTTCGGGACTACCAAGTCTGCAACAACTCATTCTAAAAGATTGCCCAAGTTTGTGCATGGTACATGAATCCATTGGAGATCTTTGCAATCTGCTACTGATAAATTTAAAGGACTGCACAAGTCTAAGTTGTCTCCCCAGAAATGTATATAAGCTGAGATCTTTAAGAACTTTCATTCTCTCTGGTTGTTCCAAGATTGACATATTGGAAGAAGATATAGTGGGTCTACATTCCTTGATAACAATAGTTACTGAAAATACAATTGTGAAACAAGTGCCCTGTTCAATCGTAAAAAGCATTGCATATATATCCCTACGTAGATTTAAAGGAATGTTACATAATACCTTTGCATCAGTCATTCAATCTTGGATGTCATCAACAATGAAACAACAATATTGTAATAGTCCATTTTTCATGGATATGGAGAATAATAATTGGCGTGTCCTTGTGCCACTGCATAACGGCCTTGCAAATCTTCGAAGTGTTTTGGTTCAATGTAAGACGGAGTTTCAACTATATAAGAAAGTGAAAAAAATTCTTGTCGAATCACCACTTGTAAACTTTTCAGAATCAAGAATTTCAAATCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATAAATTCCTCAGCACTCTCAGCGATAGCATTTCTGAGGAATTAGTAAGCAGCGAGTCTTGTGATGTTTCTCTTCCAGGTGACAACCACCCTTATTGGTTGGCCCATAGGGGTGAGGGGCATTCTGTTTCTTTCACTGTTCCTCGGGATTCTGACATGAAGGGAATGATTGTGTGTGTTGTGTATTTATCTACCTCTGAAATCGTGGCAACTGAATGTCTTACAAGTGTCTCAATTGTTAATTATACAAAGTGCACACTGCACATACACAGGCATGGTACAGTAATTTCCTTCAATGATGAAGATTGGCATAATATAATATCAAATTTAGGTTCAGGAGATAAGGTGGAGATATTTGTGACCTTTGATCATGGATTGGTGCTCAAGAACACAGTTGTATATTTGATGTGTGGTGAATCAAATGGCTTAGAAATGGTACCTTTCCCTGAGGCAGAGGAAAATGCTCTGAATAAATTCTTTAAGAAAATAGTAATGTGTGATTTCTGGTAA	4431	0.3843	MEFACSSSSSSPSFLKSEPQFKYDVFINFGGEDMGRKFVSHLHYALLQAQFKNLISTEDVQEEMKLEEHMRAIASSKIAIIVFFPLPVFTGENFDLWKLKLKTYFISQKLWDIVQSGYTKPDNIETLSEEERKKLEDSEQKDAQALFVLQQAVGETIARRIMDAETAKRAWDILEEEFEGNEQSSHAEKDCWHRGKPICHYCKKPGHVEKYCRNKNKHQANFAEEHNQEQRLFYANQESHSGEGNWYLDSGCSNHMAKDQSIFKDIDKSINVKVRLGNGATVESQGKGTVMVETKKGTKFIKDVLLVPNLKENLLSIGQMMENGYSLHFEKDTCKIYDNRRIEIGEVKMEKRNRSFPISFKPGTNIAMKAEVDDSWLWMSSRQATPIAILNRQSMESKRFTRINPHRCLWTDEDAFTSQQQKFKALVDKQSGKQIKVLRSDRGKEYTSHEFDKFCEDEGIERQLTVAYTPQQNGVSERKNRTVMEMARSMLKEKGLPNTFWAEAVYTAVYLLNRCPTKAVQDKTPIEAWTQLHNQPLKQNMWQPLKQQVRLYGFEEYSKIWEKNKLEKIIECRQTFGQIVLPVIYDIVQLEERNRKDDLVKALEEVAQSSYSGEQLEHALSRWSRALTNAAGITGWDFRDFRHDAEFVEKIVRRVQTLLDYTNMSITAFPVGLESHVEKVIGLIEEQSTEVCMIGIWGMGGSGKTTLARAIYNRIYHPFIGKSFIENIGQFQVNKRHVHLQENLLYDVLKSKFKVESDGVGRTMIETKLSQKKLLIVLDAVDEFGQLENLCGNRQWFGQGTVIIVTTRDVKVLNRLKVNYVHTMDVMNENDSLELLSWHAFREAKPRKEFNELSRNIVDYCGGLPLALQFLGSYLCDRTKEEWESVSSKLKVNPINQIQEKLEISFDGLHDMEKDIFLDICCFFIGKERGYVTEILNACGLYADIGITVLIERGLIKVERNNKLEMHPLLRDMGREIIRQRCPNEPRKRSRLWFEDDIKDVLKRNTGTKATQGLSLKLHSTGKDYFEAHAFKEMKRLRLLQLHHVQLTGDYEYLSKQLRWICWKGFPLKYIPNNFHMENVIAINLKHSYLQLVWQETPDFSGLPSLQQLILKDCPSLCMVHESIGDLCNLLLINLKDCTSLSCLPRNVYKLRSLRTFILSGCSKIDILEEDIVGLHSLITIVTENTIVKQVPCSIVKSIAYISLRRFKGMLHNTFASVIQSWMSSTMKQQYCNSPFFMDMENNNWRVLVPLHNGLANLRSVLVQCKTEFQLYKKVKKILVESPLVNFSESRISNHHLRFSLIGVGSYNKFLSTLSDSISEELVSSESCDVSLPGDNHPYWLAHRGEGHSVSFTVPRDSDMKGMIVCVVYLSTSEIVATECLTSVSIVNYTKCTLHIHRHGTVISFNDEDWHNIISNLGSGDKVEIFVTFDHGLVLKNTVVYLMCGESNGLEMVPFPEAEENALNKFFKKIVMCDFW	1476

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g00484	1476	Gene3D	-	555	657	IPR035897	-
	Viun10g00484	1476	Gene3D	Ribonuclease Inhibitor	1014	1196	IPR032675	-
	Viun10g00484	1476	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	560	1199	IPR044974	GO:0006952
	Viun10g00484	1476	PRINTS	Disease resistance protein signature	1149	1165	-	-
	Viun10g00484	1476	PRINTS	Disease resistance protein signature	693	708	-	-
	Viun10g00484	1476	PRINTS	Disease resistance protein signature	768	782	-	-
	Viun10g00484	1476	PRINTS	Disease resistance protein signature	861	875	-	-
	Viun10g00484	1476	Pfam	TIR domain	561	656	IPR000157	GO:0007165
	Viun10g00484	1476	SUPERFAMILY	Ribonuclease H-like	425	535	IPR012337	-
	Viun10g00484	1476	Gene3D	-	826	910	IPR042197	-
	Viun10g00484	1476	SUPERFAMILY	"Winged helix" DNA-binding domain	897	1003	IPR036390	-
	Viun10g00484	1476	SUPERFAMILY	Toll/Interleukin receptor TIR domain	19	83	IPR035897	-
	Viun10g00484	1476	Gene3D	-	399	540	IPR036397	GO:0003676
	Viun10g00484	1476	Pfam	NB-ARC domain	674	899	IPR002182	GO:0043531
	Viun10g00484	1476	Gene3D	-	16	86	IPR035897	-
	Viun10g00484	1476	SUPERFAMILY	L domain-like	979	1260	-	-
	Viun10g00484	1476	Gene3D	-	658	822	IPR027417	-
	Viun10g00484	1476	ProSiteProfiles	Integrase catalytic domain profile.	413	533	IPR001584	GO:0015074
	Viun10g00484	1476	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	664	920	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g00484	Viun-Chr10	4383225	4398065	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun10g00484	834	978	WRKY Transcription Factor Family	AT5G45050	28.667	3.67e-09	59.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g00484	-		-	vun:114165119	2985.67