Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00482 ATGGAGTTCGGTTCTTCTTCATCATCAGCATCTTCATCTTCATCCTTCTTAAAATCAGAACCGGTGTTCATATATGATGTGTTCATCAACTTTGGGGGAGAAGACATCGGTAGAAGGTTCGTTTCTCATCTCCATTCTTCCCTTTTACAAGCTCAAGTCAAAACTTTCATTAGCCAGGAGAATCTGCAAGAAGGAATGAAGTTGGAAGAACACATGGGAGAAATAGCAGCCTCTAAGATCGCAATAATCGTTTTCTCCAAAACATACGCTGAATCTACATGTTGTCTTTTTGAGCTTGAAAAAAAGGGTGATTTTGGAAAAGCGTTGGAAGAAGCTGCACACAAAAGCTACTCAGGAGAACAACTGGAACATGTGTTGTTCAGGTGGAGTTGTGCACTCACCAAAGCTGCAGGTATCAGTGGTTGGGATCTCAGAAATTTCAGGCATGATGCTGAACTTGTGGAGGTAACTGTTAACCGCGTTCAGAAATTGCTGGATTATCAAGGCTTGTTTATTACCCAATTTCCTATTGGATTAGAGTCGCACGTGGAAGAGGTGATCGGATGTATTGAAAATCATTCCACCAAAGTATGTATGATAGGGATATGGGGAATGGTAGGATCGGGTAAAACAACCATAGCCAAAGCCATCTATAATCGAATTTATCGTCCATTCATTGGTAAGAGTTTTATTGAAAATATTGGAGAAGTTTGGGATCAAGTATACAGAACACATGTTGATTTGCAAGAAAATTTTCTTTATGATGTTCTAAAATCCAAGCTCAAGTTGGAAAGCGTTGGGATGGGAAGAACTATGATCAAGAATGAACTTTCTCGAAGAAAGTTGCTCATTGTGCTTGATGATGTGAATGAGTTCGGCCAATTAGAAAACCTATGCGGGAATCCTGAATGGTTCAGTCAAGGAACTGTGATAATCATTACAACTAGGGATGTTCGATTGCTGAAGCGAATCGAAGTTAATTATGTTTATAAAATGGATGGTATGAACGAAAATGATTCCCTTGAGCTTTTCTGTTGTCATGCCTTTGGAGAAGCAAGAACAAGAAACTTGAACGAAATTGCAAGAAACAGAGTTTCTTATTGTGGAGGACTACCGCTGGCACTTGAGGTCTTAGGTTCCTTTTCATGTAAAAAGACAATGAGAGAGTGGGAAAGTGTACTGTCAAAAGTAAAATTAATTCCCTTGGAAGTTGAAAAGAAATTGAAATTAAGTTTTGACGGTTTAAACAAGGAGGAAATGGATATATTTCTTGATGTATGTTGTTTTTTTATTGGTAAAGAAAGAGGCTATGTCACAGAGATACTAAATGGCTGTGAACTACATGCTGATATTGGAATAACAGTTCTCATAGAATGTGGCCTCATAAAATTTGGAAGGAACAACAAACTTGAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAATATATATGTCAGAGATTTTTAAAGGAACCATGGAAAAGGAAACGGTTAGGGTTTCAGGGTGATGCAAAATATGTACTAAAAAAGAATATTGGGACAGAAGCTACTGAAGGATTGTTCCTGAAAATGCATTCAACTAGCAGAGATTACTTCGAAGCTCATGCTTTCAAGAAAATGAAGAGATTAAGATTGCTACAATTGGATCATGTACAACTTGCTGGAGATTATGGGTACCTTTCAAAACAACTCAGATGGATCTGTTGGAAAGGGTTTCCTTCTAAATACATTCCAAACAATTTTCATATGGAAAATTTAATTGCAATGGATTTAAAGTATAGTAATCTTCTACTTGTTTGGAAACAATCCCAGGTTTTAGAGCAGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCCGACTTTTCAGGGCTACCGAGTCTTGAACGACTCATTCTAAAAGATTGCCCATGTTTGTGCAAAGTACACCCATCCATTGGAGATCTCTGCAATCTACAACTCATAAATTTGAAGGATTGTGCAAGTCTAAGCAATATCCCTAGAGAGGTATACAAGTTGAAATCTTTAAAATCTTTCATCCTCTCTGGTTGTTTCAAGATTGAGATATTGGAAGAAGATATAGTGCAGATGAAATCATTGATAACTCTAGTTACGGAAAATACAGCTGTGAGACGAGTGCCCTGTTCAGTTGTAAGCTCAAAAAGCATTGGATATATATCCCTACGTGGATTTGAAGGATTGTCACAAAATCTTTTTCCTTCAATCATTCGATCTTGGATGCGACCAATGGTGAATCCCCAATCTTATTTTAGTCCGTTTTGCATGGATATGGATAATAATAATTGGCGTGACCTTGCACCATTGCATAGCGGCCTTGCAAATATTCGAAGTTTGTTGGTTCAGTGTGACACAACATTTCAACTATCTGAGCAAGTGAAAACAATTCTTGTCGAATACAGTTTAAATTTTACAGAGCAAAGAATTTCAAACCATTACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAGTGAATTCCTCAACACTCTCAGCGATAGCATTTCTAAGGGATTGGCAAGCAGTGAGTCTTGTGATGTTTGTCTTCCAGGTGACAACCATCCTTACTGGCTCGCCCATATCGGTGAGGGACGTTCTGTTTCTTTCACTGTGCCTCAAGAGCGTGACTTGAAGAGAATGGCTTTGTGTGTTGTTTATTTATCAGCCCCTGAATTCATGGCAAATGAATGTTTTCAAAGCGTCTTGGTTGTTAATTACACAAAGTGCACATTGCAGATACACAATCATGGCACAGTAATTTCCTTTAACGATAGAGATTGGGAGGGTATAATATCAAATTTAGGATCAGGAGATAAGGTGGAGTTTTTTGTGACTTTTGGTCATGGATTGGTGGTCAAGAACACAGCTATCTATCTCAATATATGGTGA 2919 0.3799 MEFGSSSSSASSSSSFLKSEPVFIYDVFINFGGEDIGRRFVSHLHSSLLQAQVKTFISQENLQEGMKLEEHMGEIAASKIAIIVFSKTYAESTCCLFELEKKGDFGKALEEAAHKSYSGEQLEHVLFRWSCALTKAAGISGWDLRNFRHDAELVEVTVNRVQKLLDYQGLFITQFPIGLESHVEEVIGCIENHSTKVCMIGIWGMVGSGKTTIAKAIYNRIYRPFIGKSFIENIGEVWDQVYRTHVDLQENFLYDVLKSKLKLESVGMGRTMIKNELSRRKLLIVLDDVNEFGQLENLCGNPEWFSQGTVIIITTRDVRLLKRIEVNYVYKMDGMNENDSLELFCCHAFGEARTRNLNEIARNRVSYCGGLPLALEVLGSFSCKKTMREWESVLSKVKLIPLEVEKKLKLSFDGLNKEEMDIFLDVCCFFIGKERGYVTEILNGCELHADIGITVLIECGLIKFGRNNKLEMHPLFRDMGREYICQRFLKEPWKRKRLGFQGDAKYVLKKNIGTEATEGLFLKMHSTSRDYFEAHAFKKMKRLRLLQLDHVQLAGDYGYLSKQLRWICWKGFPSKYIPNNFHMENLIAMDLKYSNLLLVWKQSQVLEQLKFLNLSHSKYLRETPDFSGLPSLERLILKDCPCLCKVHPSIGDLCNLQLINLKDCASLSNIPREVYKLKSLKSFILSGCFKIEILEEDIVQMKSLITLVTENTAVRRVPCSVVSSKSIGYISLRGFEGLSQNLFPSIIRSWMRPMVNPQSYFSPFCMDMDNNNWRDLAPLHSGLANIRSLLVQCDTTFQLSEQVKTILVEYSLNFTEQRISNHYLRFSLIGVGSYSEFLNTLSDSISKGLASSESCDVCLPGDNHPYWLAHIGEGRSVSFTVPQERDLKRMALCVVYLSAPEFMANECFQSVLVVNYTKCTLQIHNHGTVISFNDRDWEGIISNLGSGDKVEFFVTFGHGLVVKNTAIYLNIW 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00482 972 ProSiteProfiles TIR domain profile. 23 165 IPR000157 GO:0007165
Viun10g00482 972 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 715 IPR044974 GO:0006952
Viun10g00482 972 SUPERFAMILY "Winged helix" DNA-binding domain 403 487 IPR036390 -
Viun10g00482 972 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 102 IPR035897 -
Viun10g00482 972 Gene3D - 170 329 IPR027417 -
Viun10g00482 972 Gene3D - 334 416 IPR042197 -
Viun10g00482 972 PRINTS Disease resistance protein signature 276 290 - -
Viun10g00482 972 PRINTS Disease resistance protein signature 199 214 - -
Viun10g00482 972 PRINTS Disease resistance protein signature 604 620 - -
Viun10g00482 972 PRINTS Disease resistance protein signature 368 382 - -
Viun10g00482 972 Gene3D - 19 101 IPR035897 -
Viun10g00482 972 Pfam NB-ARC domain 180 409 IPR002182 GO:0043531
Viun10g00482 972 Gene3D - 102 169 IPR035897 -
Viun10g00482 972 SUPERFAMILY L domain-like 521 792 - -
Viun10g00482 972 Gene3D Ribonuclease Inhibitor 494 810 IPR032675 -
Viun10g00482 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 425 IPR027417 -
Viun10g00482 972 Pfam TIR domain 25 101 IPR000157 GO:0007165
Viun10g00482 972 SMART till_3 24 139 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00482 Viun-Chr10 4354953 4358903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00482 570 718 WRKY Transcription Factor Family AT5G45050 32.886 3.11e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00482 - - pvu:PHAVU_010G027900g 1352.81