Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00476 ATGGAGTTCGGTTCTTCTTCATCATCAGCATCTTCATCTTCATCCTTCTTAAAATCAGAACCGGTGTTCATATATGATGTGTTCATCAACTTTGGGGGAGAAGACATCGGTAGAAGGTTCGTTTCTCATCTCCATTCTTCCCTTTTACAAGCTCAAGTCAAAACTTTCATTAGCCAGGAGAATCTGCAAGAAGGAATGAAGTTGGAAGAACACATGGGAGAAATAGCAGCCTCTAAGATCGCAATAATCGTTTTCTCCAAAACATACGCTGAATCTACATGTTGTCTTTTTGAGCTTGAAAAAGTAATTGAATGCCACCAAACCTTTGGGCAAATTGTTCTGCCCATATTTTACGAGATTGACCCATTGGATGTATATCTTCAGAAGGGTGATTTTGGAAAAGCGTTGGAAGAAGCTGCACACAAAAGCTACTCAGGAGAACAACTGGAACATGTGTTGTTCAGGTGGAGTTGTGCACTCACCAAAGCTGCAGGTATCAGTGGTTGGGATCTCAGAAATTTCAGGCATGATGCTGAACTTGTGGAGGTAACTGTTAACCGCGTTCAGAAATTGCTGGATTATCAAGGCTTGTTTATTACCCAATTTCCTATTGGATTAGAGTCGCACGTGGAAGAGGTGATCGGATGTATTGAAAATCATTCCACCAAAGTATGTATGATAGGGATATGGGGAATGGTAGGATCGGGTAAAACAACCATAGCCAAAGCCATCTATAATCGAATTTATCGTCCATTCATTGGTAAGAGTTTTATTGAAAATATTGGAGAAGTTTGGGATCAAGTATACAGAACACATGTTGATTTGCAAGAAAATTTTCTTTATGATGTTCTAAAATCCAAGCTCAAGTTGGAAAGCGTTGGGATGGGAAGAACTATGATCAAGAATGAACTTTCTCGAAGAAAGTTGCTCATTGTGCTTGATGATGTGAATGAGTTCGGCCAATTAGAAAACCTATGCGGGAATCCTGAATGGTTCAGTCAAGGAACTGTGATAATCATTACAACTAGGGATGTTCGATTGCTGAAGCGAATCGAAGTTAATTATGTTTATAAAATGGATGGTATGAACGAAAATGATTCCCTTGAGCTTTTCTGTTGTCATGCCTTTGGAGAAGCAAGAACAAGAAACTTGAACGAAATTGCAAGAAACAGAGTTTCTTATTGTGGAGGACTACCGCTGGCACTTGAGGTCTTAGGTTCCTTTTCATGTAAAAAGACAATGAGAGAGTGGGAAAGTGTACTGTCAAAAGTAAAATTAATTCCCTTGGAAGTTGAAAAGAAATTGAAATTAAGTTTTGACGGTTTAAACAAGGAGGAAATGGATATATTTCTTGATGTATGTTGTTTTTTTATTGGTAAAGAAAGAGGCTATGTCACAGAGATACTAAATGGCTGTGAACTACATGCTGATATTGGAATAACAGTTCTCATAGAATGTGGCCTCATAAAATTTGGAAGGAACAACAAACTTGAAATGCATCCTTTGTTTCGAGACATGGGAAGAGAATATATATGTCAGAGATTTTTAAAGGAACCATGGAAAAGGAAACGGTTAGGGTTTCAGGGTGATGCAAAATATGTACTAAAAAAGAATATTGGGACAGAAGCTACTGAAGGATTGTTCCTGAAAATGCATTCAACTAGCAGAGATTACTTCGAAGCTCATGCTTTCAAGAAAATGAAGAGATTAAGATTGCTACAATTGGATCATGTACAACTTGCTGGAGATTATGGGTACCTTTCAAAACAACTCAGATGGATCTGTTGGAAAGGGTTTCCTTCTAAATACATTCCAAACAATTTTCATATGGAAAATTTAATTGCAATGGATTTAAAGTATAGTAATCTTCTACTTGTTTGGAAACAATCCCAGGTTTTAGAGCAGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCCGACTTTTCAGGGCTACCGAGTCTTGAACGACTCATTCTAAAAGATTGCCCATGTTTGTGCAAAGTACACCCATCCATTGGAGATCTCTGCAATCTACAACTCATAAATTTGAAGGATTGTGCAAGTCTAAGCAATATCCCTAGAGAGGTATACAAGTTGAAATCTTTAAAATCTTTCATCCTCTCTGGTTGTTTCAAGATTGAGATATTGGAAGAAGATATAGTGCAGATGAAATCATTGATAACTCTAGTTACGGAAAATACAGCTGTGAGACGAGTGCCCTGTTCAGTTGTAAGCTCAAAAAGCATTGGATATATATCCCTACGTGGATTTGAAGGATTGTCACAAAATCTTTTTCCTTCAATCATTCGATCTTGGATGCGACCAATGGTGAATCCCCAATCTTATTTTAGTCCGTTTTGCATGGATATGGATAATAATAATTGGCGTGACCTTGCACCATTGCATAGCGGCCTTGCAAATATTCGAAGTTTGTTGGTTCAGTGTGACACAACATTTCAACTATCTGAGCAAGTGAAAACAATTCTTGTCGAATACAGTTTAAATTTTACAGAGCAAAGAATTTCAAACCATTACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAGTGAATTCCTCAACACTCTCAGCGATAGCATTTCTAAGGGATTGGCAAGCAGTGAGTCTTGTGATGTTTGTCTTCCAGGTGACAACCATCCTTACTGGCTCGCCCATATCGGTGAGGGACGTTCTGTTTCTTTCACTGTGCCTCAAGAGCGTGACTTGAAGAGAATGGCTTTGTGTGTTGTTTATTTATCAGCCCCTGAATTCATGGCAAATGAATGTTTTCAAAGCGTCTTGGTTGTTAATTACACAAAGTGCACATTGCAGATACACAATCATGGCACAGTAATTTCCTTTAACGATAGAGATTGGGAGGGTATAATATCAAATTTAGGATCAGGAGATAAGGTGGAGTTTTTTGTGACTTTTGGTCATGGATTGGTGGTCAAGAACACAGCTATCTATCTCAATATATGGTGA 3000 0.3803 MEFGSSSSSASSSSSFLKSEPVFIYDVFINFGGEDIGRRFVSHLHSSLLQAQVKTFISQENLQEGMKLEEHMGEIAASKIAIIVFSKTYAESTCCLFELEKVIECHQTFGQIVLPIFYEIDPLDVYLQKGDFGKALEEAAHKSYSGEQLEHVLFRWSCALTKAAGISGWDLRNFRHDAELVEVTVNRVQKLLDYQGLFITQFPIGLESHVEEVIGCIENHSTKVCMIGIWGMVGSGKTTIAKAIYNRIYRPFIGKSFIENIGEVWDQVYRTHVDLQENFLYDVLKSKLKLESVGMGRTMIKNELSRRKLLIVLDDVNEFGQLENLCGNPEWFSQGTVIIITTRDVRLLKRIEVNYVYKMDGMNENDSLELFCCHAFGEARTRNLNEIARNRVSYCGGLPLALEVLGSFSCKKTMREWESVLSKVKLIPLEVEKKLKLSFDGLNKEEMDIFLDVCCFFIGKERGYVTEILNGCELHADIGITVLIECGLIKFGRNNKLEMHPLFRDMGREYICQRFLKEPWKRKRLGFQGDAKYVLKKNIGTEATEGLFLKMHSTSRDYFEAHAFKKMKRLRLLQLDHVQLAGDYGYLSKQLRWICWKGFPSKYIPNNFHMENLIAMDLKYSNLLLVWKQSQVLEQLKFLNLSHSKYLRETPDFSGLPSLERLILKDCPCLCKVHPSIGDLCNLQLINLKDCASLSNIPREVYKLKSLKSFILSGCFKIEILEEDIVQMKSLITLVTENTAVRRVPCSVVSSKSIGYISLRGFEGLSQNLFPSIIRSWMRPMVNPQSYFSPFCMDMDNNNWRDLAPLHSGLANIRSLLVQCDTTFQLSEQVKTILVEYSLNFTEQRISNHYLRFSLIGVGSYSEFLNTLSDSISKGLASSESCDVCLPGDNHPYWLAHIGEGRSVSFTVPQERDLKRMALCVVYLSAPEFMANECFQSVLVVNYTKCTLQIHNHGTVISFNDRDWEGIISNLGSGDKVEFFVTFGHGLVVKNTAIYLNIW 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00476 999 SUPERFAMILY L domain-like 548 819 - -
Viun10g00476 999 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 742 IPR044974 GO:0006952
Viun10g00476 999 Gene3D - 19 194 IPR035897 -
Viun10g00476 999 Gene3D Ribonuclease Inhibitor 521 837 IPR032675 -
Viun10g00476 999 Pfam TIR domain 25 188 IPR000157 GO:0007165
Viun10g00476 999 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 169 IPR035897 -
Viun10g00476 999 Gene3D - 361 443 IPR042197 -
Viun10g00476 999 ProSiteProfiles TIR domain profile. 23 192 IPR000157 GO:0007165
Viun10g00476 999 Pfam NB-ARC domain 207 436 IPR002182 GO:0043531
Viun10g00476 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 452 IPR027417 -
Viun10g00476 999 SMART till_3 24 166 IPR000157 GO:0007165
Viun10g00476 999 PRINTS Disease resistance protein signature 303 317 - -
Viun10g00476 999 PRINTS Disease resistance protein signature 631 647 - -
Viun10g00476 999 PRINTS Disease resistance protein signature 395 409 - -
Viun10g00476 999 PRINTS Disease resistance protein signature 226 241 - -
Viun10g00476 999 SUPERFAMILY "Winged helix" DNA-binding domain 430 514 IPR036390 -
Viun10g00476 999 Gene3D - 197 356 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00476 Viun-Chr10 4307333 4311282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00476 25 748 WRKY Transcription Factor Family AT4G12020 29.045 8.19e-71 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00476 - - pvu:PHAVU_010G027900g 1414.44