Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun10g00466 | ATGGACAAGTTCTTCGAGGATGTGGAGGGCGTGAAAGAGGACATGAGAAGCGTGGAGATGCTGTACAGAAAGCTGCAAGAGGTGAACGAGGAGAGCAAAATGGCGAAGGCGATGAAGGAGATTCGGGCGCGCATGGATAAGGACGTGGAGCTGGTGCTGAAGCGCGTGAAGGTGGTAAAGGGGAAGCTGGAGGCGCTGGAGCGGTCGAACGCGGCGAACCGAAGCTTGCCGGGGTGCGGGCCGGGGTCGTCGACGGACCGGACGAGGACGTCGGTGGTGAGCGGGTTGGGGAAGAAGCTGAAGGACATAATGGCTGATGCGTGA | 324 | 0.5988 | MDKFFEDVEGVKEDMRSVEMLYRKLQEVNEESKMAKAMKEIRARMDKDVELVLKRVKVVKGKLEALERSNAANRSLPGCGPGSSTDRTRTSVVSGLGKKLKDIMADA | 107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun10g00466 | 107 | Gene3D | - | 1 | 106 | - | - | |
| Viun10g00466 | 107 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 1 | 107 | - | - | |
| Viun10g00466 | 107 | SUPERFAMILY | t-snare proteins | 1 | 105 | IPR010989 | GO:0016020|GO:0016192 | |
| Viun10g00466 | 107 | SMART | SynN_4 | 1 | 107 | IPR006011 | GO:0016020 | |
| Viun10g00466 | 107 | MobiDBLite | consensus disorder prediction | 76 | 92 | - | - | |
| Viun10g00466 | 107 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
| Viun10g00466 | 107 | Pfam | Syntaxin | 3 | 106 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun10g00466 | Viun-Chr10 | 4238276 | 4238599 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun10g00466 | 1 | 104 | SNARE and Associated Proteins | AT1G11250 | 70.093 | 6.82e-49 | 155 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun10g00466 | K08486 | - | vun:114166996 | 186.808 |