Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00464 ATGGCGTCACCAGTTCCTTCCATGGAATTCGCCTCTTCAACTTCCAAACTCCCACAGATGTACGACGTGCTGATTAACTTCAATGGAGAAGACATTCGCAGGAAATTTGTTTCTCATCTCGATTCTGTGCTCTCTGCTGCTGGACTCACCACTTTCCTTCACCACCAGAATGCAGTCAATGACATGGACATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATTGTTGTTTTCACCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCATCAAATCATCAAATGGCACGAAACTTATTGTCGACATGTTCTGCCTGTATATTACGAGATTCAGCCATCTGATGTGCGTCTTCAGAAGGGTGATTTTGGAGAAGCATTCAAAGCAACTGCACAACAAACATTTTCACCACAACAACTAGAGCATGGCATGTCAAGGTGGAGCCACGCGCTCGCCAAAGCAGCAAATTTCTATGGCTGGGATGAGAGCACTTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTCTTAATTTATCAGTCTTGTCTGCTACAAATTTTCCAGTTGGATTACAATCCCGTATGGAAGAAGTGATTCAACTTATAAAAAATGAATCCAGGGAAGTTTGTAGGATAGGGATATGTGGAATGGGAGGGTCAGGTAAAACAACACTTGCGAAAGCCATCTATAATCAAATTCTTGGTACATTCACAGTGAAAATTTTCATTGAAGATGTTGCACAAGTTATTCAAACAAGAGGGCATGCTCATTTACGAAAACAGCTTCTTTCTAATGTCTTAAAAACAGATATACATAGCGTTAAGGGGATGAGAGGAAATATGATTCGAAAAAGGCTTAGTAAAAGGGTGCTCATTGTTCTTGACGATGTGGATGATCATTATTTTTCTTGTTTAGATGAGACTGAGTACGGTCCGGCCCTTTGGTACCACTTCGCTGAAGGATCTGTAATAATCATTACAACAAGAGATGTAGTAGACATACATTTGAAAAAAAATTGTTCTGTTTTTCAGATAAACAAAATGAACCCAGACGAGTCCGTTGAGCTTCTCAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAGGAATGTCATTTCCTCGCAAAAATGGTAGTTGATTACTGTGGAGGATTACCTCTAGCTCTTGAAGTCATTGGATCTTGTTTATATGAAAGGCCGAAAGAAGAATGGAATAAAGTATTGTCAAGATTAGAAAGTATTCCCCGCCATGAAGTTCTACAAATATTGAAAATAAGCTTCGATGGCTTACTTAATCAATCGGAAAAAGATCTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAGACATAACCTATGTCACGAAGATCCTAAATGTCTGTGGAGTAGACCCTGACAGGGGAATAAGAGTTCTCATAGAGCGTAGCCTCATAAAAGTTGAAAAAAACAACAAAGTTGGAATGCATCCTCTGCTACAAGAAATGGGAACAAAAATTGTTCGTGATTTTTCAAGAAAAAGGAACCTGCGAGGAACAATTATCTTTTGGTTGATGAAGATTTCAAACATGCGCTGTCAGAGAAACATCAAGAACATTGAACCTAAGATTCTGATACAAGTTAACTGA 1644 0.3917 MASPVPSMEFASSTSKLPQMYDVLINFNGEDIRRKFVSHLDSVLSAAGLTTFLHHQNAVNDMDIQQPILNLCRVAIVVFTKTYSQSAWCLHQLHQIIKWHETYCRHVLPVYYEIQPSDVRLQKGDFGEAFKATAQQTFSPQQLEHGMSRWSHALAKAANFYGWDESTYRSDAELVDKIVKSVLNLSVLSATNFPVGLQSRMEEVIQLIKNESREVCRIGICGMGGSGKTTLAKAIYNQILGTFTVKIFIEDVAQVIQTRGHAHLRKQLLSNVLKTDIHSVKGMRGNMIRKRLSKRVLIVLDDVDDHYFSCLDETEYGPALWYHFAEGSVIIITTRDVVDIHLKKNCSVFQINKMNPDESVELLSWHAFREAKPKEECHFLAKMVVDYCGGLPLALEVIGSCLYERPKEEWNKVLSRLESIPRHEVLQILKISFDGLLNQSEKDLFLDVCCFFVGKDITYVTKILNVCGVDPDRGIRVLIERSLIKVEKNNKVGMHPLLQEMGTKIVRDFSRKRNLRGTIIFWLMKISNMRCQRNIKNIEPKILIQVN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00464 547 Pfam TIR domain 21 184 IPR000157 GO:0007165
Viun10g00464 547 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Viun10g00464 547 PRINTS Disease resistance protein signature 217 232 - -
Viun10g00464 547 PRINTS Disease resistance protein signature 290 304 - -
Viun10g00464 547 PRINTS Disease resistance protein signature 388 402 - -
Viun10g00464 547 Gene3D - 14 182 IPR035897 -
Viun10g00464 547 SMART till_3 20 160 IPR000157 GO:0007165
Viun10g00464 547 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 512 IPR044974 GO:0006952
Viun10g00464 547 SUPERFAMILY "Winged helix" DNA-binding domain 424 511 IPR036390 -
Viun10g00464 547 Gene3D - 353 436 IPR042197 -
Viun10g00464 547 Gene3D - 183 345 IPR027417 -
Viun10g00464 547 ProSiteProfiles TIR domain profile. 19 186 IPR000157 GO:0007165
Viun10g00464 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 447 IPR027417 -
Viun10g00464 547 Pfam NB-ARC domain 200 423 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00464 Viun-Chr10 4217527 4219546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00464 6 513 WRKY Transcription Factor Family AT4G12020 28.711 1.21e-48 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00464 - - pvu:PHAVU_010G029000g 671.003