Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00460 ATGGCGGCGGCGGCGGCGGCGACGGCGGTGACGACAGTGACGGCGGCGGCGGCGACGGTGACGACGGCGGCGACATTGACGGGTTCTAAAATACATGCTTCCATCAGACGTACTCTAATTTACAAATTCCAGACTGAAATTTCTGAAGGTGATGTTTATGCCATACAAAATTTCAGTGTTGCTCCAAATTCTGGAATTTACAGAACTACGCACCACCCTTATAAGATTAATTTCCAGTTTGGTACCAAAGTTAGTTTGCTTGATGGTAACTTGGTTCCTGATGTGAAACCACAATACACACCTTTGTCATTATTGACAACCACTGGATTCGATACTGATTATTTAGTTGATGTATTGGGATTACTGGTCAGAGTGGGTACTGAAAGAGAATTGCAAGTTGATGGAAAGACAACAAAATTAAATGTCATTGCAATAGAAGCTGATGAGTCTCGAATAGAATGTACTTTGTTTGGTATTTATGTCGATGAACTGAATGTATTTCTTTCAAGTGGAGAAGTACAAAATTGTGCTATAAGTATAGAATTAGCGAAAGTCAAAACTTTTCAAGATAAGGTTCAACTTCAAAATTGCAAGTTCTGCACTAGGATTAAGTACAATGTTAACTTCAAGGAGGCATATGAACTTAAATCAAGGATGATTGAGAACAATGAATCTCCCTCTCAAGGATTAACGCAGCTGTCTCAGACTTCCAAACATACTGTGGAAGAAGACTTTTTAACTCTTACACCTAGGACGACTATTCAAGGTCTTAAAGATTGTAAAGAGGTTGCAACTTTCATATTGTTTGGAACCATTAACCATATCTTGGATGAGGATGACTGGTGGTATACGGCTTGTGTTTGCAACAAAGCTGTTTATCCAGATTCAAAGATGTTCTTTTGCGAGAAGTGTAACAAGCATGTTATAAAAGTCTTTCCAAGATATAGGATTAAGGTTCGAGTTATTGACTCATCCGATTCCACCACATTTGTTCTGTTTGATAGGGATGCAACCACCCTTTTCAAAAAAACCTGTGCTGATATGTTAGAGTCTCATGATAAGATGAATGGTTGTGGGAATTTTCCTAAGGAGTTTGAAGAATTAGTTAATAAAAGTCTGTTGTTTAAAGTTGAAAGTAGGAACGATCAAACTTTCAAACTTGAACAATCTTTCAGAGTGAAGAAAATATGTCTTGATGATGATATAATTGAGAAGTTCAATGATTCTTCGTTGAAATCTGTGGATGTTTATGCTGGCAATGGTGAGTTTAGCAGAGAAAAACAGCGTGTAGTCAATGAGTCTACTGTTGATATTGCAGAGGATTTATTATTCAGATTTACCAAAGAAACAATTGACTGTGCATCCCAATCTGCTGACTTAATCAAAGATACTGCTACAAATGAGGATGGTAACACTTCACTTAAGAGAGAATCTGCAAAGAAGACCTTATCAATTGAATCCATCGAAGAAGACACTGTTCTACTGAAGCTGCTAAAAAGAAATATTAAGAAGGAAAAAATAGTCAAACAATAG 1533 0.3744 MAAAAAATAVTTVTAAAATVTTAATLTGSKIHASIRRTLIYKFQTEISEGDVYAIQNFSVAPNSGIYRTTHHPYKINFQFGTKVSLLDGNLVPDVKPQYTPLSLLTTTGFDTDYLVDVLGLLVRVGTERELQVDGKTTKLNVIAIEADESRIECTLFGIYVDELNVFLSSGEVQNCAISIELAKVKTFQDKVQLQNCKFCTRIKYNVNFKEAYELKSRMIENNESPSQGLTQLSQTSKHTVEEDFLTLTPRTTIQGLKDCKEVATFILFGTINHILDEDDWWYTACVCNKAVYPDSKMFFCEKCNKHVIKVFPRYRIKVRVIDSSDSTTFVLFDRDATTLFKKTCADMLESHDKMNGCGNFPKEFEELVNKSLLFKVESRNDQTFKLEQSFRVKKICLDDDIIEKFNDSSLKSVDVYAGNGEFSREKQRVVNESTVDIAEDLLFRFTKETIDCASQSADLIKDTATNEDGNTSLKRESAKKTLSIESIEEDTVLLKLLKRNIKKEKIVKQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00460 510 SUPERFAMILY Nucleic acid-binding proteins 108 219 IPR012340 -
Viun10g00460 510 Pfam Domain of unknown function DUF223 27 88 IPR003871 -
Viun10g00460 510 SUPERFAMILY Nucleic acid-binding proteins 249 384 IPR012340 -
Viun10g00460 510 CDD RPA1_DBD_C 266 396 IPR047192 -
Viun10g00460 510 Gene3D - 22 85 IPR012340 -
Viun10g00460 510 Gene3D - 92 228 IPR012340 -
Viun10g00460 510 SUPERFAMILY Nucleic acid-binding proteins 27 87 IPR012340 -
Viun10g00460 510 CDD RPA1_DBD_A_like 27 84 - -
Viun10g00460 510 Gene3D - 234 405 IPR012340 -
Viun10g00460 510 Pfam Replication factor-A C terminal domain 269 390 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00460 Viun-Chr10 4155422 4158405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00460 28 393 Core DNA Replication Machinery Family AT5G08020 24.211 2.36e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00460 - - vun:114165619 742.651