Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00456 ATGGAATTCGACTCTTCAACTTCAAAACTCCCAGGGATGTACGATGTTCTCATCAACTTCACAGGAGAAGACATCCGAAGAAAATTTGTTTCTCATCTCGATTATGCTCTCTCTATTGCTGGGCTCACAACTTTCCTTCACGAGGAGAATGCAGTGAAGGGCAGGCAAATCCAACAACCTATTCTCAATCTGTGTCGGGTAGCAATTGTTGTTTTCTCCAAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTCCAACAAATCATCAAATGGCAAGAAACTTATTCCCGACATGTTCTGCCCATATATTACGAAATTCAGCCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGTGAAGCCTTCAAAGCAACTGCACACAAAACATTCTCAAGACAACAACTGCAGCATGGCATGTCAAGGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGGGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTCTTAATTTAGCAGTCTTGTCTGCTACTAATTTTCCAGTTGGATTACAATCCCGTATGGAAGAAGTGATTCAAATTATAAAAAATGAATCCAGGGATGTTTGCAGGATAGGGATATGTGGAATGGGAGGATCAGGTAAAACAACACTTGCGAAAGCCATCTATAATCAAATTCATGGTACATTCACAGATAAAATTTTCATTGAAGATGTTGCACAAGTTACTCAAACAAGAGGGCATGCTCATTTAAAAAAGCAACTTCTTTCTAGTGTTCTAAAAACAGATATACATAGCGTTAAGGGGACGAGAGGAAATATGATTCGAGAAAGGCTCAGGAAAAGGGTGCTCATTGTTCTTGACGATGTGGATGATCATTATTTTTCTTATTTAGAGGAGACTAGGTATGGTCCGGCCCTTTGGCCATTCTTCAGTGAAGGATCTGTAATAATCATTACAACAAGAGATGTAGTAGTAGACATACATTTTTTTTCTGTTTTTCAGATAAACAAAATGAACCCAGACGAGTCCGTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAGGAATGTCATTTCCTTGCAAAAATGATAGTTGATTACTGTGGAGGATTACCTCTATCTCTTGAAGTCATTGGATCTTGTTTATATGAAAGGCCGAAAGAAGAATGGAATAAAGTATTGTCAAGATTAGAAAGTATTCCCCCGCATGAAGTTCTACAAATATTGAAAATAAGCTTCGATGGCTTACTTAATCAATCGGAAAAAGATTTATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAAGACATAACCTATGTCACGAAGATCCTAAATGTCTGTGGAGTAGACCCTGACAGGGGAATAAGACTTCTCATAGAGCGTAGCCTCATAAAAGTTGAAAAAAATAACAAAGTTGGAATGCATCCTCTACTACAAATAATGGGAATAAAAATTGTTTGTGATTTTTCAAGAAAAAGGAACCTGCGAGGAACAATCATCTTTTGGTTGATGAAGATTTCAAACATGCGCTGTCAGAGAAACATCAAGAACATTGAACGTAAGATTCTGATTCAAGTTAACTGA 1617 0.3822 MEFDSSTSKLPGMYDVLINFTGEDIRRKFVSHLDYALSIAGLTTFLHEENAVKGRQIQQPILNLCRVAIVVFSKTYSQSAWCLHQLQQIIKWQETYSRHVLPIYYEIQPSDVRLQKGDFGEAFKATAHKTFSRQQLQHGMSRWSHALTKAANFFGWDGSNYRSDAELVDKIVKSVLNLAVLSATNFPVGLQSRMEEVIQIIKNESRDVCRIGICGMGGSGKTTLAKAIYNQIHGTFTDKIFIEDVAQVTQTRGHAHLKKQLLSSVLKTDIHSVKGTRGNMIRERLRKRVLIVLDDVDDHYFSYLEETRYGPALWPFFSEGSVIIITTRDVVVDIHFFSVFQINKMNPDESVELLSWHAFREAKPKEECHFLAKMIVDYCGGLPLSLEVIGSCLYERPKEEWNKVLSRLESIPPHEVLQILKISFDGLLNQSEKDLFLDVCCFFVGKDITYVTKILNVCGVDPDRGIRLLIERSLIKVEKNNKVGMHPLLQIMGIKIVCDFSRKRNLRGTIIFWLMKISNMRCQRNIKNIERKILIQVN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00456 538 SMART till_3 13 153 IPR000157 GO:0007165
Viun10g00456 538 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Viun10g00456 538 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 503 IPR044974 GO:0006952
Viun10g00456 538 PRINTS Disease resistance protein signature 379 393 - -
Viun10g00456 538 PRINTS Disease resistance protein signature 283 297 - -
Viun10g00456 538 PRINTS Disease resistance protein signature 210 225 - -
Viun10g00456 538 Gene3D - 344 427 IPR042197 -
Viun10g00456 538 Gene3D - 12 175 IPR035897 -
Viun10g00456 538 Pfam TIR domain 14 177 IPR000157 GO:0007165
Viun10g00456 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 438 IPR027417 -
Viun10g00456 538 Pfam NB-ARC domain 192 411 IPR002182 GO:0043531
Viun10g00456 538 SMART AAA_5 207 346 IPR003593 GO:0016887
Viun10g00456 538 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Viun10g00456 538 Gene3D - 176 335 IPR027417 -
Viun10g00456 538 SUPERFAMILY "Winged helix" DNA-binding domain 415 501 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00456 Viun-Chr10 4129882 4132208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00456 14 497 WRKY Transcription Factor Family AT4G12020 29.065 1.25e-48 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00456 - - pvu:PHAVU_010G027500g 648.277