Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00452 ATGGAGTTCTCTTCTTCGTCATCATCTTCATCATCTTCATCTTTCTTAAAATCAGGACCCCATTTCATATACGATGTGTTCATCAACTTTTGGGGAGAAGACATCGGTAAAAAGTTCATTTCTCATCTCTATTATGCCCTTTTAGAAGCTCAAGTCAAAACTTTTATTAACGAGGAGAGTCTGCCGAAGGAACTGGAGCTGAAAGAGCACATGCGAGCAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCCAAAACATACGCTGAATCTAGCAGCTGTCTTCTTGAGCTTGAAGAAATCATTGAATGCCTCCAAACATTTGGCCAAATAGTTTTGCACGTGTTTTACGATGTTGATCCATTGGATGTACGGGATCAGGTGAGTGATTTTGGAAAAGCGTTGCAAGAAACTGCAGAAAAAAGCTATTCAGGAGAACAAGTGGAACATGTGTTGTCCAGGTGGAGCCGTGCACTCACCACAGCTTCAGATTCCACTGGTTGGGATGTCAGATATTTCGAGCATGATGCTCAACTTGTAGAGCGAATTGTTAGTGACGTGAAGACATTTTTGGACTATAAAGACTTGTTGATTACCCCATTTCCTGTTGGAATAGACTCCCGCGTGGAAGACGTGGTTAAATGTATTGAAAGTCAATCTACAAAAGTGTGTATGATAGGGATATGTGGAATGCGAGGATCAGGGAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTACCGAAAGAATTAGATTATTATCTTGGGATACAGCATATAAAACAAATATTCGTTCGCAACTCCTTCATAACGTCCTAAAGTTCAAGGTGCCAGACGTTAGGAGTAGAAGAACTATGGTCGACCATGAACTTTCTGGAAGAAAGTTGCTCATTGTGTTTGATGATGTGAATGAGTTTGGCCAATTAGAATATTTATGCAAGAATCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACGACTAGATATGTTCGCTTGCTGAACCGATTCAAAGTTAATTATGTTTATAAAATGGATGTTATGAACAAAAATGAGTCCCTTGAACTTTTTAGTTGGCATGCCTTTAGAGAACCAAAACCAAGAAAAGAGTTCGGGGAAGTTGCAAGAAACACGGTTGCTTATTGTGGAGGACTACCATTAGCTCTTGAAGTCCTTGGTTCTTCTTTATATGATAGGATAATGGTAGAATGGGAAAGTATATCGTCACAAATTCCCATCGATAAAGTTCAAGAAATATTGAAAATAACTTTTGATGATTTAACTGACATGGAAAAGAATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGAGAGAGGCTATGTTACAGAAATACTAAATGACTGTGGACTACTTGGTAATTATCCGATAGAAGTTCTCCTACGACTTGGCCTCGTAAAAGTTGAAAGGAACAACAAACTTCAAATGCATCCTTTGCTACATGACATTGGAAAAGAAATTGTTCGTCAAAGCTGCCCAGAGGAAGCGGAGAAAAGGAGTCGATTATGGTTCCAGGATGATATAAAATACGTACTGAAAAATAATACTGGGACAGAAGCTATTGAGGGATTGTCCCTGAAACTACATTCAACCAGCAGAGATTGCTTCGAAACTCATGCTTTCAAAAAATGA 1686 0.3837 MEFSSSSSSSSSSSFLKSGPHFIYDVFINFWGEDIGKKFISHLYYALLEAQVKTFINEESLPKELELKEHMRAIAASKIAIIVFSKTYAESSSCLLELEEIIECLQTFGQIVLHVFYDVDPLDVRDQVSDFGKALQETAEKSYSGEQVEHVLSRWSRALTTASDSTGWDVRYFEHDAQLVERIVSDVKTFLDYKDLLITPFPVGIDSRVEDVVKCIESQSTKVCMIGICGMRGSGKTTIAKAIYNRIYREFIGKSFTERIRLLSWDTAYKTNIRSQLLHNVLKFKVPDVRSRRTMVDHELSGRKLLIVFDDVNEFGQLEYLCKNREWFGQGTVIIITTRYVRLLNRFKVNYVYKMDVMNKNESLELFSWHAFREPKPRKEFGEVARNTVAYCGGLPLALEVLGSSLYDRIMVEWESISSQIPIDKVQEILKITFDDLTDMEKNIFLDVCCFFIGKERGYVTEILNDCGLLGNYPIEVLLRLGLVKVERNNKLQMHPLLHDIGKEIVRQSCPEEAEKRSRLWFQDDIKYVLKNNTGTEAIEGLSLKLHSTSRDCFETHAFKK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00452 561 Gene3D - 196 352 IPR027417 -
Viun10g00452 561 PRINTS Disease resistance protein signature 225 240 - -
Viun10g00452 561 PRINTS Disease resistance protein signature 392 406 - -
Viun10g00452 561 PRINTS Disease resistance protein signature 299 313 - -
Viun10g00452 561 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Viun10g00452 561 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Viun10g00452 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 447 IPR027417 -
Viun10g00452 561 SUPERFAMILY "Winged helix" DNA-binding domain 424 531 IPR036390 -
Viun10g00452 561 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 168 IPR035897 -
Viun10g00452 561 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 545 IPR044974 GO:0006952
Viun10g00452 561 Pfam TIR domain 24 188 IPR000157 GO:0007165
Viun10g00452 561 SMART till_3 23 165 IPR000157 GO:0007165
Viun10g00452 561 Gene3D - 23 195 IPR035897 -
Viun10g00452 561 Pfam NB-ARC domain 208 436 IPR002182 GO:0043531
Viun10g00452 561 Gene3D - 357 438 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00452 Viun-Chr10 4116294 4120458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00452 24 546 WRKY Transcription Factor Family AT4G12020 26.443 2.59e-44 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00452 - - vun:114165946 699.123