Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00449 ATGGAGTTCGCATCTTCTAGTTCTTCTTCATCTTCATCTTCATCTTCATCCTTCTTAAAATCAGAACCGGTATTCATAAATGATGTGTTCATCAACTTTGGGGGAGAAGACATCGGTAGAAGGTTCGTTTCTCATCTCCATTCTGCCCTTTTACAAGCTCAAGTCAAAACTTTTATTAGCCAGGAGAATCTGCAAGAAGGAATGGAGCAAGAAGAGCACCTGCGAGCAATAGGAGGCACTAAGATTGCAATAATGGTTTTCTCCAAATCATATGCTGAATGTACCTGTTGTCTTCATGAGCTTGAAAAAATCATTGAATGCCACCAAACGTTTGGCCAAATGGTTGTGCCCGTATATTACGAGATTGACCCATTGGATGTACAACATCAGAAGAATGATTTTGGAAAAGCCTTGGAAGAAGCTGCACACAAAAGCTATGCAGAAGACCTACTGGAATATGCGTTGTCCAAGTGGAGCCGTGCACTCACCACAGCTACAGGTGTCACTGGTTGGGATGTCAGAGATTTCAGGCATGATGCTGAACTTGTAGAGCGAATTGTTAGTCTTGTTGAGTCATTACTGGACTATAAAGACTTGTTTACTACCCAATATCCTGTTGGATTAGAGTCTCCAGTGGAAGACGTGATTAAATGTATTGAAAATCAATCCACCAAAGTGTGTGTGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCATCAATTCATTGGTAAGAGTTTTATTGAGAATATTCGTGAAGCTTGGGCTTCAGAATATGATAGATATGTTGATTTGCAAGCAAATCTTCTTTCTGATGTCCTAAAATCCAAGTTGGAGGTGAAAAGCGTTGGGATGGGAAGAGCTATGATCCACGATGAACTTTCTCGCAGAAAGTTGCTGATTGTGCTTGATGATGTGAATGACTTTGTCCAATTAGAAAACCTATGCCGGAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATGTTCATTTGCTGAACCTACTCAAAGTTAATTATGTTTACAAAATGCATCTTTTGAACAAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCTTTTAGAGAAGCAAAACCAATAAAAGAATGGAATGAACATGCAAGAGACATAGTTGATTATTGTGGAGGACTACCACTAGCTCTTCAGTTCCTTGGTTCCTATTTATGTGATATCACAAAAGAAGCGTGGGAAAGGGTATTTTCGAACCTAAATAGCATTCCAACGTATCAAGTTCAAAAGGTATTAAAAATAAGTTTTGACGCTTTACGTGATATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGCAAACAAAGAGAGTATGTCACAGAGATATTAAATGGCTGTGGACTATGTGCTGATATTGGAATAACAGTTCTCATAGAACGTGGCCTCATAAAAGTTGAAAGGAACAACAAACTTGAAATGCACCCTTTGTTACGAGACATGGGAAGAGAATTTATTCGTGAATTACACCCAAAGGAACCGGGGAAAAGGAGTCGATTATGGTTTCAGGAAGATGTACAAGATGTACTGGAAGAGAATAGTGGGACAGAAGCTATAGAGGGATTGTCCCTGAAACTGCATTCCAGCAATAGAGATTCCTTGGAAGCTCTTGCTTTCAAGAAAATGAAGAGACTAAGACTGCTACAACTTGATCATGTACGACTTAGTGGAGATTATGGGCACATTTCTAAAGAACTGAGATGGATTTGTTGGCGAGGGTTTCCTTATAAATACATTCCAAACAGCTTTCATTTGGAAAATGTAATTGCAATTGATTTCAAACATAGCCATCTCCAACTCCTCTCGAAACAACACCTGGTTTTAGAACGGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACCTGATAGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAACAACTCATTCTAAAAGATTGTCCAAGTTTGCGTGAGGTACACGAATCCATTGGACGTCTCAGGAATCTACTACTGATAAATTTGAAGGACTGTACAAGTCTATGCTATCTTCCAAGAGAGGTATATAGGTTGAGATCTTTAAAAACTCTCGTTCTCTCTGGTTGTTTGAAGTTTGGCCCAATAGATAAAGCATGGGTGAAATCCTTCGTAACTATAATTACTGAAAACACAACTGTGAAACAAGCGCCCTTTGATCAATTGTAA 2256 0.3874 MEFASSSSSSSSSSSSSFLKSEPVFINDVFINFGGEDIGRRFVSHLHSALLQAQVKTFISQENLQEGMEQEEHLRAIGGTKIAIMVFSKSYAECTCCLHELEKIIECHQTFGQMVVPVYYEIDPLDVQHQKNDFGKALEEAAHKSYAEDLLEYALSKWSRALTTATGVTGWDVRDFRHDAELVERIVSLVESLLDYKDLFTTQYPVGLESPVEDVIKCIENQSTKVCVIGIWGMGGSGKTTIAKAIYNRIYHQFIGKSFIENIREAWASEYDRYVDLQANLLSDVLKSKLEVKSVGMGRAMIHDELSRRKLLIVLDDVNDFVQLENLCRSREWFGQGTVIIITTRDVHLLNLLKVNYVYKMHLLNKNDSLELLSWHAFREAKPIKEWNEHARDIVDYCGGLPLALQFLGSYLCDITKEAWERVFSNLNSIPTYQVQKVLKISFDALRDMEKDIFLDVCCFFIGKQREYVTEILNGCGLCADIGITVLIERGLIKVERNNKLEMHPLLRDMGREFIRELHPKEPGKRSRLWFQEDVQDVLEENSGTEAIEGLSLKLHSSNRDSLEALAFKKMKRLRLLQLDHVRLSGDYGHISKELRWICWRGFPYKYIPNSFHLENVIAIDFKHSHLQLLSKQHLVLERLKFLNLSHSKYLIETPDFSGLPSLEQLILKDCPSLREVHESIGRLRNLLLINLKDCTSLCYLPREVYRLRSLKTLVLSGCLKFGPIDKAWVKSFVTIITENTTVKQAPFDQL 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00449 751 SUPERFAMILY "Winged helix" DNA-binding domain 434 540 IPR036390 -
Viun10g00449 751 Gene3D - 363 447 IPR042197 -
Viun10g00449 751 SUPERFAMILY L domain-like 516 726 - -
Viun10g00449 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 456 IPR027417 -
Viun10g00449 751 SMART till_3 26 168 IPR000157 GO:0007165
Viun10g00449 751 Gene3D - 27 196 IPR035897 -
Viun10g00449 751 Gene3D Ribonuclease Inhibitor 534 736 IPR032675 -
Viun10g00449 751 PRINTS Disease resistance protein signature 228 243 - -
Viun10g00449 751 PRINTS Disease resistance protein signature 706 722 - -
Viun10g00449 751 PRINTS Disease resistance protein signature 305 319 - -
Viun10g00449 751 PRINTS Disease resistance protein signature 398 412 - -
Viun10g00449 751 Gene3D - 197 358 IPR027417 -
Viun10g00449 751 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 721 IPR044974 GO:0006952
Viun10g00449 751 SUPERFAMILY Toll/Interleukin receptor TIR domain 25 171 IPR035897 -
Viun10g00449 751 Pfam NB-ARC domain 209 446 IPR002182 GO:0043531
Viun10g00449 751 Pfam TIR domain 28 190 IPR000157 GO:0007165
Viun10g00449 751 ProSiteProfiles TIR domain profile. 25 194 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00449 Viun-Chr10 4103269 4106010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00449 28 723 WRKY Transcription Factor Family AT4G12020 28.911 1.11e-76 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00449 - - vun:114165946 1475.69