Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00444 ATGGGGCCAAACGCTGCGGCGGCGAAACAAGCAGAGCAGCTCCGAATTAACGGCAACACTTACTTCAAGAAAGACCGTTTTGGTGCCGCCATCGATGCTTACACCGAGGCGATTACACTGTGCCCTAATGTTCCGATTTATTGGACGAATCGTGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTGGAGGAAGATTCTCGGAAGGCAATTCAGCTGGACAGCAGTTCAGCCCACTATATGTTGGGGCTCGCATTGCTACAGAGACAAGAATCTGCCAAGGGAATTAAAGAATTGGAGAAGGCTTTGGATCTCGGAAGAGGTGCCAATCCTAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAGCGATCATCGTCGGAACGAACATGGGAATTGCAGAGCTTGAAATTAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTACTCGAATTCTCCCAAGCGGAAGGATTTGTAGATGATCCTACTACTTCCCATTCAGAACAATTAGAGGCTTTAAAAGTAGTCTTCAAGATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTACTTATGTTGCAGAATCACACTCGACATTTTTCACGATCCTGTAATCACTCCAAGTGGGCTTACATATGAGAGAGCAGTGATTCTTGAGCATCTTCAGAAGGTGGGTAAATTCGACCCAATAACGCGGGAACCGCTTGATCCATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTCTTGGACAAGCATGGTTGGGCTTACAAGGTAGACTAA 831 0.4705 MGPNAAAAKQAEQLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSSSAHYMLGLALLQRQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERSSSERTWELQSLKLACESALKEKHLLEFSQAEGFVDDPTTSHSEQLEALKVVFKIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDPSQLVPNLAIKEAVQAFLDKHGWAYKVD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00444 276 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Viun10g00444 276 SMART tpr_5 45 78 IPR019734 GO:0005515
Viun10g00444 276 SMART tpr_5 11 44 IPR019734 GO:0005515
Viun10g00444 276 SMART tpr_5 79 110 IPR019734 GO:0005515
Viun10g00444 276 SUPERFAMILY RING/U-box 192 273 - -
Viun10g00444 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 6 274 IPR045200 GO:0000209|GO:0061630
Viun10g00444 276 SUPERFAMILY TPR-like 9 127 IPR011990 GO:0005515
Viun10g00444 276 ProSiteProfiles U-box domain profile. 198 272 IPR003613 GO:0004842|GO:0016567
Viun10g00444 276 Gene3D Tetratricopeptide repeat domain 5 139 IPR011990 GO:0005515
Viun10g00444 276 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Viun10g00444 276 SMART Ubox_2 202 265 IPR003613 GO:0004842|GO:0016567
Viun10g00444 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 275 IPR013083 -
Viun10g00444 276 CDD RING-Ubox_CHIP 199 269 IPR045202 -
Viun10g00444 276 Pfam U-box domain 199 271 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00444 Viun-Chr10 4071334 4077574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00444 4 275 U-box Gene Family AT3G07370 67.518 1.90e-138 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00444 K09561 - gmx:100796519 505.753