Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00424 ATGGTCAAGTCTTGTTGTAGTATGTGTTTGTGTTTGGTCTTACTTCATATTTTCCTGTGCTTTGTGCCAACACAATCAGCACCAGAAAGTGCCATTGTGGCACAGGTTCCTGGCTTCAGTGGGACTCTACCTTCCAAGCACTATGCTGGGTATGTGACAGTGGGTGAGAGTCGTTCGAAGAACTTGTTTTACTATTTTGTTGAATCACAGGGTGACCCTTCTGTGGACCCTGTGGTTCTGTGGCTTAATGGGGGACCTGGCTGCTCTAGCTTTGATGGATTCGTGTATGAGCATGGTCCTTTTAATTTTGAGGCAGCGAAGACAAAAGGGGGTCTTCCCACACTACATCTCAATCCATACAGCTGGTCAAAGGTTTCCAATATTATATATTTGGATTCTCCTGCTGGTGTGGGGTGGTCATACTCAAAGAATGAAACTGATTACATAACTGGAGACACACAGACTGCCTCTGATTCACATGAGTTTCTTCTTAAGTGGTTTGAACTATACCCTGAGTTCCTTACCAACCCGTTCTTCATTGCTGGAGAGTCCTATGCAGGAGTGTATGTGCCTACTCTCACTGCTGAAGTTGTGAAAGGAATTGAGGCTGGTGTGGAGCCCATACTAAATCTCAAGGGTTACATGGTTGGAAATGGTGTGACAGATGAAGAATTTGATGGCAATGCTCTTGTTCCATTTGTACATGGGATGGGACTTATCTCAGATGACCTGTTTAAGGAGGTGAACAGAGAGTGCAATGGGAATTTTTATAATCCAACCAGTGAAATTTGTTCTGGCAAGCTTGCTAAAGTTGATGAGTTGGTTGATGGGATAAACATTTACAACATCCTGGAACCATGTTATCACGCCTCAGAGGCAGTGAAGATTACAGAATCCTATATTAGGTTGCCATCTAGCTTCCGGAAGTTGGGCGAGACTGAAAAACCTTTCCCAGTAAGGAAAAGAATGTTCGGTCGTGCCTGGCCCCTAAGAGCACCTGTGAGAGCTGGAATTGTACCAACTTGGCCACAGCTGACGAGTTTACAACTTTCTCCACCATGCACGGATGATGAGGTTGCAAACGCATGGTTGAACAATGAAGAAGTCAGGACAGCAATTCATGTTGCACAGAAAAGTGTCGTCAGTAGTTGGGAAATATGCACAGACAGAATTTTCTTTGATCATGATGCTGGGAGCATGATCGACTATCACAAGTACTTAACTTCCAAAGGTTATAGAGCACTTATATTCAGTGGTGATCATGATATGTGTGTTCCATATACGGGGAGTGAGGCATGGACAAGATCTATTGGATACAAGATTGTTGATGAATGGAGGCCATGGTCTTCCAATGGTCAAGTTGCTGGGTACACTCAAGGATATGACAAAAACCTTACTTTTCTGACCATAAAGGGATCTGGGCATACTGTTCCGGAATATAAACCACGAGAGGCATTGGACTTTTACAAACGCTTTCTTGCTGGATTGCCAATATGA 1497 0.4382 MVKSCCSMCLCLVLLHIFLCFVPTQSAPESAIVAQVPGFSGTLPSKHYAGYVTVGESRSKNLFYYFVESQGDPSVDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKTKGGLPTLHLNPYSWSKVSNIIYLDSPAGVGWSYSKNETDYITGDTQTASDSHEFLLKWFELYPEFLTNPFFIAGESYAGVYVPTLTAEVVKGIEAGVEPILNLKGYMVGNGVTDEEFDGNALVPFVHGMGLISDDLFKEVNRECNGNFYNPTSEICSGKLAKVDELVDGINIYNILEPCYHASEAVKITESYIRLPSSFRKLGETEKPFPVRKRMFGRAWPLRAPVRAGIVPTWPQLTSLQLSPPCTDDEVANAWLNNEEVRTAIHVAQKSVVSSWEICTDRIFFDHDAGSMIDYHKYLTSKGYRALIFSGDHDMCVPYTGSEAWTRSIGYKIVDEWRPWSSNGQVAGYTQGYDKNLTFLTIKGSGHTVPEYKPREALDFYKRFLAGLPI 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00424 498 SUPERFAMILY alpha/beta-Hydrolases 33 497 IPR029058 -
Viun10g00424 498 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Viun10g00424 498 FunFam Carboxypeptidase 26 310 - -
Viun10g00424 498 Pfam Serine carboxypeptidase 37 494 IPR001563 GO:0004185|GO:0006508
Viun10g00424 498 ProSitePatterns Serine carboxypeptidases, histidine active site. 465 482 IPR033124 GO:0004185
Viun10g00424 498 Gene3D - 350 497 - -
Viun10g00424 498 FunFam Carboxypeptidase 400 495 - -
Viun10g00424 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Viun10g00424 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 465 478 IPR001563 GO:0004185|GO:0006508
Viun10g00424 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Viun10g00424 498 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Viun10g00424 498 Gene3D alpha/beta hydrolase 25 318 IPR029058 -
Viun10g00424 498 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 482 IPR001563 GO:0004185|GO:0006508
Viun10g00424 498 FunFam Carboxypeptidase 353 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00424 Viun-Chr10 3690284 3695026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00424 359 498 Calmodulin-binding Proteins AT2G22960 46.429 6.47e-40 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00424 K16296 - gmx:100792057 915.99