Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00416 ATGGAGTTTGAGTCAGAGGAAGCTGCTAAGAACTTTTATGACGAATATGCAAAACATGAAGGGTTTGTTGTTCGCCTTGATCGTTGCCATCGTTCTGAGGTTGACAACCGAATCATTTCACGCCGTTTTTCGTGCAATAAGCAAGGTTTTCATGTGAGGGTTAGAAATAAAACCAAGCCTGTTCATAAACCAAGGACTAGCATAAGAGAAGGTTGTGAAGCCATGATGTTGGTTAAAGTTAATAAATTTGGGAAGTGGGTGGTTACTAAATTTGTGAAGGAGCACAGTCATCTGCTAAATGCTTCTGGTTCTCGTTCATATAGTAAAATGATTGAATCAAAGGATAGGATAATTCAACAACTCACAAAGGAACTTGAGTACCGAGATCGATTATGTCAGCAATATCGCAGACAGCTATTCTCCCTTCTGGAGACTGTTGAGGAACAAACGGAAAGTTTATCAAAAAATGTTGAGCTTGTTGTTAACAATATAAAAAATCTTTAG 504 0.381 MEFESEEAAKNFYDEYAKHEGFVVRLDRCHRSEVDNRIISRRFSCNKQGFHVRVRNKTKPVHKPRTSIREGCEAMMLVKVNKFGKWVVTKFVKEHSHLLNASGSRSYSKMIESKDRIIQQLTKELEYRDRLCQQYRRQLFSLLETVEEQTESLSKNVELVVNNIKNL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00416 167 Pfam FAR1 DNA-binding domain 11 100 IPR004330 -
Viun10g00416 167 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 163 - -
Viun10g00416 167 Coils Coil 143 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00416 Viun-Chr10 3643161 3645984 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun10g00416 FAR1 3.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00416 - - var:108347130 327.02