Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00387 ATGGAAGAACACGAGGAGAAAACCATCATCACCAAGTTCGCGAAATCCAAATTCTTCTTCCCCAAAGTTATTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAAGAAGAAGACGACGAAGAAAAGCTTATTCACCTTCACAGAGTTAAGAGAGTGTTGTTGTTCGACCAAGTACAAGGAAGCTATGAAACAGCAACACCACCAACAAAAACAAGAGCACAAGTTTCGCGGCGTGCGGCAGCGGCCATGGGACGGTGGGCCGCTGAGATAAGAGACCCTATACGGCGGAAACGAGTGTGGCTTGGAACCTTCGACACGGCAGAAGAAGCAGCTGTGGTTTACGACAGAGCAGCTATAAACCTCAGAGGTGCCGATGCTGTCACTAATTTCATCAAACCGCCGTTGAAAGAGTGTGAAAGTGGGGTTAAACGGAGGAGTTGTGGCGCATGTGCTTCACCCACTTCGGTTCTGTTGTTTCAGCCTTGGATGGAACCTTTGTCTTTGGAAGAAACATTCAAAGAAGAAGTGTTGATGGGTTAA 552 0.4801 MEEHEEKTIITKFAKSKFFFPKVIRISATDHNATDSSSEEEDDEEKLIHLHRVKRVLLFDQVQGSYETATPPTKTRAQVSRRAAAAMGRWAAEIRDPIRRKRVWLGTFDTAEEAAVVYDRAAINLRGADAVTNFIKPPLKECESGVKRRSCGACASPTSVLLFQPWMEPLSLEETFKEEVLMG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00387 183 Pfam AP2 domain 87 127 IPR001471 GO:0003700|GO:0006355
Viun10g00387 183 CDD AP2 93 134 IPR001471 GO:0003700|GO:0006355
Viun10g00387 183 SUPERFAMILY DNA-binding domain 87 134 IPR016177 GO:0003677
Viun10g00387 183 Gene3D AP2/ERF domain 78 136 IPR036955 GO:0003700|GO:0006355
Viun10g00387 183 ProSiteProfiles AP2/ERF domain profile. 74 135 IPR001471 GO:0003700|GO:0006355
Viun10g00387 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 161 - -
Viun10g00387 183 SMART rav1_2 88 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00387 Viun-Chr10 3192119 3192743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00387 5 181 AP2-EREBP Transcription Factor Family AT4G27950 37.778 1.36e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g00387 AP2 2.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00387 - K13434 vun:114166961 350.517