Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00377 ATGGTGCTGCATAGCAGGATTTTCAGCCACCATGTTGTTAGTTTCTTGTTGCTGATTAGTTGTGGCATGACCTATGGAACTGATACAGATATCTTCTGCTTAAAAACTATCAAAGATGCCCTTGAAGACCCCAATAACTATTTGAAGTTTTCTTGGGATTTCAACAACAGAACTGAAGGGTTTATATGCAAGTTTATTGGGGTTGAGTGTTGGCACCCTGATGAGAACAAGGTCCTGAATCTCAGACTGTCCAATATGGGACTCAAGGGCCAGTTTCCTCGTACCATTCAAAATTGCTCCAGCTTAACTGGGTTAGACCTTTCAATTAACAAACTCTCTGGAACCATTCCGGGAGATATATCTACTCTTGTACCATTTGTAACCTCTCTTGACCTTTCTTCAAATGAATTTTCCGGGGCGATTCCGGTGACTCTTTCAAATTGCACCTTTCTCAATAGCCTTAAACTTGATCAGAACAGACTCACTGGTCAGATTCCTCTACAATTTGGTATTCTCTCACGGCTCAAGATCTTTTCTGTGTCCAACAATCTTTTGACGGGGCAAGTTCCAAGCTTTGGCTCTCAAGTTTCAGTGAATTATGCAAATAATCAAGGCCTGTGTGGAGGTAATGGATTGGGGTCTTGCCAAGCCAAGAGTTCTAAGAGTAACATGGCTGTTATTGCTGGAGCTGCTGCAGGTGGGGTGACTCTTGCAGCATTAGGATTGGCAGTTGGAATGTTCTTCTTCGTGCGACGCGTTTCTTTCAAGAAGGAGGAGGATCCTGAAGGAAACAAATGGGCAAGAAGTCTAAAAGGAACTAAACAAATTAAGGTTTCTATGTTTGAGAAATCAATCTCAAAAATGAAGTTGATTGATCTCATGAAGGCTACTAACAACTTCAGCAATACCAATATCATTGGTTCAGGAAGAACAGGAACTGTTTACAAAGCTGTGCTTGGTGATGGCACAACACTTATGGTTAAGAGATTACAGGAATCTCAGTACACTGAAAAGGAATTCATGTCTGAGATGGGTACACTAGGGACTGTCAAACATCGCAATCTTGTTCCTCTTTTAGGTTTTTGCATGGCCAAAAAGGAAAGGCTTTTGGTCTATAAAAACATGCCAAATGGAAATCTCCATGACCAACTCCATCCTGCAGATGGTGTGAGCACCCTTGACTGGACTACAAGACTCAAAATTGCAATTGGAGCAGCCAAAGGGTTAGCATGGCTTCATCATAGCTGCAACCCCCGAATCATCCACCGAAACATAAGCTCAAAGTGCATCTTGTTGGATGCAGATTTTGAGCCGAAAATTTCTGATTTTGGCCTTGCAAGAATGATGAACCCAATTGATACTCATCTGAGTACTTTTGTAAATGGGGAGTTTGGTGATTTGGGCTATGTTGCTCCTGAGTACACAAGAACTTTGGTTGCTACACCCAAGGGGGATGTTTATAGCTTTGGCACTGTTCTTCTTGAGTTGGTGACTGGTGAAAGACCCACCAATGTGGCTAAAGCACCAGAAACTTTCAAAGGAAATCTGGTGGAATGGATCACAGAGCTAACAAACAATGCAAAACTCCATGATGCCATTGATGAATCATTGGTCAACAAGGATGTTGACAGTGAGCTTTTCCAATTTCTGAAGATTGCATGCAACTGTGTTCTGCCAACTCCAAAGGAGAGGCCAACCATGTTTGAAGTGTATCAGTTTTTAAGAGCCATTGGTGCTAGATACAATTTCACAACTGAAGATGAGATATTGGTACCTACTGATAATGGTGAGGCTGATAACATGCAGGAACTTATTGTAGCTCGGGAATGA 1830 0.4197 MVLHSRIFSHHVVSFLLLISCGMTYGTDTDIFCLKTIKDALEDPNNYLKFSWDFNNRTEGFICKFIGVECWHPDENKVLNLRLSNMGLKGQFPRTIQNCSSLTGLDLSINKLSGTIPGDISTLVPFVTSLDLSSNEFSGAIPVTLSNCTFLNSLKLDQNRLTGQIPLQFGILSRLKIFSVSNNLLTGQVPSFGSQVSVNYANNQGLCGGNGLGSCQAKSSKSNMAVIAGAAAGGVTLAALGLAVGMFFFVRRVSFKKEEDPEGNKWARSLKGTKQIKVSMFEKSISKMKLIDLMKATNNFSNTNIIGSGRTGTVYKAVLGDGTTLMVKRLQESQYTEKEFMSEMGTLGTVKHRNLVPLLGFCMAKKERLLVYKNMPNGNLHDQLHPADGVSTLDWTTRLKIAIGAAKGLAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARMMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWITELTNNAKLHDAIDESLVNKDVDSELFQFLKIACNCVLPTPKERPTMFEVYQFLRAIGARYNFTTEDEILVPTDNGEADNMQELIVARE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00377 609 Gene3D Transferase(Phosphotransferase) domain 1 375 592 - -
Viun10g00377 609 Gene3D Ribonuclease Inhibitor 28 217 IPR032675 -
Viun10g00377 609 FunFam Nuclear pore complex protein NUP107 27 191 - -
Viun10g00377 609 Pfam Protein tyrosine and serine/threonine kinase 303 574 IPR001245 GO:0004672|GO:0006468
Viun10g00377 609 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Viun10g00377 609 SUPERFAMILY L domain-like 32 195 - -
Viun10g00377 609 Gene3D Phosphorylase Kinase; domain 1 261 373 - -
Viun10g00377 609 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 47 192 - -
Viun10g00377 609 SUPERFAMILY Protein kinase-like (PK-like) 277 574 IPR011009 -
Viun10g00377 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 261 374 - -
Viun10g00377 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 375 595 - -
Viun10g00377 609 ProSiteProfiles Protein kinase domain profile. 300 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00377 609 CDD STKc_IRAK 306 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00377 Viun-Chr10 3104385 3108371 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00377 13 588 Receptor kinase-like Gene Family AT3G28450 47.359 1.13e-180 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Viun10g00377 PK_Tyr_Ser-Thr 2.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00377 - - gmx:100305365 981.474