Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00297 ATGAGGATTGTAGGATTGGGTTTTCGCCCCACAGATGAAGAACTCGTCGACTTCTACCTCAAACACAGATTGCTCGGTGATGATCCCCGTGTTCGCGTCATGACTGACATAGATCTTTGCGATGTTGAACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAAAGACCGAGAATGGTGTTTCTTCAGTCCTGTTAAATTGATGTCCTCAAATAGTAAAAGGTTTATCAGGAGAACCAAGTCTGGGTTCTGGAAACCCACTGGAAAAGACCGTGATGTTAGAAGCAGGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCAAATATGGTCGTGCTTCCAAAGTGCGTAGAAGGATCGTAAACTAG 387 0.4367 MRIVGLGFRPTDEELVDFYLKHRLLGDDPRVRVMTDIDLCDVEPWEVPVMLAKSVIPFKDREWCFFSPVKLMSSNSKRFIRRTKSGFWKPTGKDRDVRSRDTNTVIGTKKTLVFKYGRASKVRRRIVN 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00297 128 ProSiteProfiles NAC domain profile. 2 128 IPR003441 GO:0003677|GO:0006355
Viun10g00297 128 Gene3D NAC domain 11 125 IPR036093 GO:0003677|GO:0006355
Viun10g00297 128 Pfam No apical meristem (NAM) protein 5 120 IPR003441 GO:0003677|GO:0006355
Viun10g00297 128 SUPERFAMILY NAC domain 4 121 IPR036093 GO:0003677|GO:0006355
Viun10g00297 128 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00297 Viun-Chr10 2401258 2405069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00297 5 119 NAC Transcription Factor Family AT5G17260 49.565 1.06e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g00297 NAM 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00297 - - vra:106778154 200.675