Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00294 ATGAGGATTGTAGGATTGGGTTTTCGCCCCACAGATGAAGAACTCGTCGACTTCTACCTCAAACACAGATTGCTCGGTGATGATCCCCGTGTTCGCGTCATGACTGACATAGATCTTTGCGATGTTGAACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAAAGACCGAGAATGGTGTTTCTTCAGTCCTGTTAAATTGATGTCCTCAAATAGTAAAAGGTTTATCAGGAGAACCAAGTCTGGGTTCTGGAAACCCACTGGAAAAGACCGTGATGTTAGAAGCAGGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCAAATATGGTCGTGCTTCCAAAGAATCAGTAGATACATCTTCGTCAATTGGAAGAAGATTCATGTGGCAGGATTTTATAAGCTCTGCTTCTTTTGTGTAA 441 0.4218 MRIVGLGFRPTDEELVDFYLKHRLLGDDPRVRVMTDIDLCDVEPWEVPVMLAKSVIPFKDREWCFFSPVKLMSSNSKRFIRRTKSGFWKPTGKDRDVRSRDTNTVIGTKKTLVFKYGRASKESVDTSSSIGRRFMWQDFISSASFV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00294 146 SUPERFAMILY NAC domain 4 122 IPR036093 GO:0003677|GO:0006355
Viun10g00294 146 ProSiteProfiles NAC domain profile. 2 146 IPR003441 GO:0003677|GO:0006355
Viun10g00294 146 Pfam No apical meristem (NAM) protein 5 121 IPR003441 GO:0003677|GO:0006355
Viun10g00294 146 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 122 - -
Viun10g00294 146 Gene3D NAC domain 11 130 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00294 Viun-Chr10 2401257 2417694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00294 5 119 NAC Transcription Factor Family AT5G17260 49.565 6.04e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g00294 NAM 8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00294 - - vra:106778154 200.675