Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00293 ATGAGGATTGTAGGATTGGGTTTTCGCCCCACAGATGAAGAACTCGTCGACTTCTACCTCAAACACAGATTGCTCGGTGATGATCCCCGTGTTCGCGTCATGACTGACATAGATCTTTGCGATGTTGAACCTTGGGAAGTACCAGTGATGTTAGCAAAATCAGTAATACCATTCAAAGACCGAGAATGGTGTTTCTTCAGTCCTGTTAAATTGATGTCCTCAAATAGTAAAAGGTTTATCAGGAGAACCAAGTCTGGGTTCTGGAAACCCACTGGAAAAGACCGTGATGTTAGAAGCAGGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCAAATATGGTCGTGCTTCCAAAGGTGTCAATTCCGACTGGTTTATTTACGAATATCATGCTCTTAACTTTCTTGAAAGCCAGGATGGCTCCCCATCCAGCTTCACATCCATCACATTCAAGAACTAA 468 0.4316 MRIVGLGFRPTDEELVDFYLKHRLLGDDPRVRVMTDIDLCDVEPWEVPVMLAKSVIPFKDREWCFFSPVKLMSSNSKRFIRRTKSGFWKPTGKDRDVRSRDTNTVIGTKKTLVFKYGRASKGVNSDWFIYEYHALNFLESQDGSPSSFTSITFKN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00293 155 ProSiteProfiles NAC domain profile. 2 154 IPR003441 GO:0003677|GO:0006355
Viun10g00293 155 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 134 - -
Viun10g00293 155 Gene3D NAC domain 11 150 IPR036093 GO:0003677|GO:0006355
Viun10g00293 155 SUPERFAMILY NAC domain 4 136 IPR036093 GO:0003677|GO:0006355
Viun10g00293 155 Pfam No apical meristem (NAM) protein 5 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00293 Viun-Chr10 2401257 2417694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00293 4 134 NAC Transcription Factor Family AT3G49530 47.328 4.46e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun10g00293 NAM 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00293 - - vra:106778154 230.335