Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00290 ATGGCTTTGGAGAACTTCTACAACATATTTGATGCCACAAAGCAAAAAACGCAGTTTTGGACTTCATGGCAGCCATTAGAATCACCATGCTTGTTGGAGCACGTGATTTTACCAGTGGAACTTGGGTTCTCTGTGATCCTGTTAATCCAACTCCTAAGAAAATATATGAGCCTGATCAGAAAGCAAACCAAGGTTCCAGATGGTGCCACAAAATCGATGCATCCACCAGCAATCAAACACGGTTTTGCTTACAAAATCAGCATTGTCAGCAACACACTGTTGCTGGGTGTTCATGCATCACTGCTGCTACTGATGCTGAATCAAGAGACTCAATGCACCTCAAAGCTTCAGGCTTTCACATCAGAGATAGTTCAGGTGTTATCATGGGTCACTAGTCTTGTAGCAACATGGAAGACATCAAAATCAAGCACACATTTCCCTTGGATTCTGAGGGCTTGGTGGCTCTGCAGTTTCATCGTGTGCATCATAAGCACAGGCCTTCATGTCCATTTCAGTGTCACCAACAGTGGCCAGATTAGCATCAGAGAATATGCAGATTTTCTTGGTTTGATTGCTTCATCATGCCTTCTGGTTGTTTCCACAACTGGGAAAACAGGCACTGTGATGCTTGCCACAAATGGTGCAGCAGAACCACTTCTTGGAGAGAAAACTGAGAAACATTCGGAGATTCTAAAGGAATCTCCATATGGAAAAGCCACGCTTCTGCAACTCATTAATTTCTCATGGCTCAACCCTTTGTTTGCAGTAGGGTATAAGAAACCCCTTGAACAGAGTGACATTCCTGATGTTGACATCAAAGACTCTGCTGAGTTTCTGACATGTTCCTTTGATGAGAGCCTTAGGAAAGTCAAGGAGGAAGATGGCACTGCAAACCCTTCTATCTACAAGGCGATCTACCTTTTTGCTCGGAAGAAAGCTGCACTGAATGCATTGTTTGCAGTGGTGAATGCTTCAGCATCTTATGTTGGTCCATACTTGATAACAGACTTTGTGGATTTCTTGGGAGAGAAGGAAGCTCGTGGCTTGAAGAGTGGATACCTTCTTTCACTGGCTTTTCTCTGTGCCAAAATGGTGGAAACCATAGCTCAGCGCCAATGGATTTTTGGAGCCAGACAATTAGGCCTTCGCCTCAGAGCTGCATTGATATCTCATATATATCAGAAGGGTCTGCATCTGTCGAGTAGATCGCGCCAGAGTCACACAGGTGGTGAGATTATGAACTACATGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTACGTGAATGTGATATGGATGCTGCCAATACAAATTTCCTTAGCAGTGTTCATTCTGCATACGAATCTAGGACTAGGTTCATTGGCTGCACTGGCTGCAACATTGGGAGTGATGACCTTGAACATACCTCTAACAAAGATACAGAAAAGATACCAGGCCAAGATCATGGATGCCAAGGACAACAGAATGAAAGCAACTTCAGAAGTCCTCAGAAACATGAGGACTCTGAAGCTTCAAGCATGGGACAGTCAATTTTGTGAGAGGATAGAAGCACTGAGGAATGTGGAGTACAATTGGCTAACAAAGTCCTTGAGGCAAGCAGCATTTTCTGCCTTTATCTTCTGGGGGTCACCTACATTCATTTCTGTGATAACCTTTTGGGCATGCATGTTCATGGGGATTGAACTGACAGCAGGAAGGGTCTTGTCTGCATTTGCAACATTCAGAATGCTGCAGGATCCTATATTCAGCTTGCCTGATCTGCTCAATGTCATTGCTCAGGGAAAAGTTTCTGTTGATAGAATCGCTTCATTCCTCCGTGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTAGCAAAGGAGAGAACAGAATTTGATGTGGTTATTGAGAGAGGGAGATTCAGCTGGGATCCTGATTCAACAACTCCAACCATTGATGAAATAGAGTTGAGAGTTAAGAGGGGAATGAAGGTGGCAGTGTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTTCTATCAGGGATTTTGGGAGAAATATATAAACAGTCTGGGAATGTTAAGATCAGTGGAACAAAAGCTTATGTTCCACAATCTGCATGGATACTCACTGGAAACATAAGGGACAACATCACCTTTGGAAAAGAGTACAATGCTGATAAGTATGACAAAACTGTTGAGGCATGTGCATTAAAAAAGGACTTTGAGCTATTCTCATGTGGTGACATGACAGAGATTGGAGAAAGAGGGATTAACATGAGTGGTGGACAGAAACAAAGGATACAGATTGCTAGAGCAGTTTACCAGGATGCTGATATATACCTTTTTGATGATCCTTTCAGTGCTGTTGATGCTCATACCGGTACTCACCTCTTCAAGGAGTGCCTTATGGGGATTCTCAAAGAGAAAACTATAATTTTTGTCACACATCAAGTTGAGTTTCTCCCAGCAGCAGACCTCATTCTGGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGTTTTGGTTGGTGCTCACAGCAAAGCTCTGGAGTCAATTGTTGTTGCTGAAAACTCAAGTAGAACAAGTTTCAATTCAATAGCTGAAGAAGGGGAATCCAACTTGAACTCCAGGTCAAGTCTTCAGCATGACAAAGTGCAAGACAATCCTCCAGAGGACAAAGGAAATGATGGAAAGTTGGTGCAAGAAGAGGAAAGAGAAACAGGAAGCATAGCAAAAGAAGTTTACTGGACTTATTTGACCACTGTCAAAGGAGGAATGTTTGTTCCTCTCATTCTCTTGGCACAATCTTCATTCCAAATTCTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCCACAAGTAGTGATGCCAAGCCTATATTTGACATGAATTTCATACTACTTATTTATATGGCACTCTCAGTTGCTGGTTCATTCTGTGTTCTTCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACAGCACAGTCACTTTTCACAAAAATGTTGCATAGTGTGCTCCGAGCCCCCATGTCCTTTTTTGATTCTACCCCAGCTGGAAGAATCTTGAATAGGGCTTCCACAGATCAAAGTGTGCTAGATTTGGAAATGGCAAACAAAGTAGGATGGTGTGCTTTCTCAATAATACAGATTCTAGGAACCATTGCCGTGATGTGTCAAGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTTACTGCAGTCTGCATATGGTATCAAAGATATTATACTCCTACAGCTAGAGAACTGGCTCGCTTAGCGCAGATTCAGATCACTCCAATTCTCCATCATTTTTCAGAATCTTTGGCAGGAGCAGCATCAATAAGAGCTTTTGATCAAGAAGGCCGTTTCATATACACCAATCTTCTCCTTGTGGATGGCTTCTCAAGGCCATGGTTTCATAATGTGTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTGTCAAATTTTGTTTTTGCCTTCTCATTGGTCATGCTAGTGAGCCTCCCTGAAGGAATAATCAACCCAAGTATTGCAGGACTTGCAGTAACATATGGGATCAATCTGAATGTGCTGCAAGCTTCAGTTATATGGAACATATGCAATGCAGAAAACAAGATGATATCAGTTGAAAGAATTCTTCAGTACACAAATATAAAAAGTGAAGCACCTCTTGTGATTGAAGACAGAAGGCCACCAAGCAACTGGCCAGAAACTGGAACAATATGTTTCAAAAATTTACAGATACGTTATGCTGAACATCTACCATCCGTGTTGAAAAACATCACTTGCACATTTCCTGGGAGGAAGAAAGTTGGTGTTGTTGGGCGTACTGGGAGTGGAAAATCAACCCTCATACAAGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATTATCATTGACAATGTGGATATATGCAAGATAGGTCTCCATGATTTAAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTGTTTGAAGGAACTGTTAGAGGAAACTTGGACCCTCTTCAGCAATACTCTGACATTGAAGTGTGGGAGGCTCTAGACAAATGTCAACTGGGCCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGAGTCCCCTGTGGTTGAAAATGGTGATAACTGGAGTGTTGGCCAAAGGCAATTATTTTGCCTTGGAAGAGCCCTGCTGAAAAGAAGCAGCATACTAGTGCTGGATGAAGCCACAGCCTCAGTGGATTCTGCAACTGATGGAGTGTTACAGAACATCATAAGTCAAGAGTTCAAACATAGAACTGTTGTCACAATAGCTCACAGAATCCACACAGTTATTGATAGCGATTTGGTTTTGGTGCTCAGTGATGGGAGAATTGCAGAGTATGATGAACCATCAAGGTTACTTGAGAGAGAAGATTCATTCTTCTTTAAACTAATAAAGGAGTATTCTGGAAGATCACAAAGCTTCAACAGTTTGGCAACACAACATGTCCAAAGCAGGGAAGAATTATAG 4539 0.4226 MALENFYNIFDATKQKTQFWTSWQPLESPCLLEHVILPVELGFSVILLIQLLRKYMSLIRKQTKVPDGATKSMHPPAIKHGFAYKISIVSNTLLLGVHASLLLLMLNQETQCTSKLQAFTSEIVQVLSWVTSLVATWKTSKSSTHFPWILRAWWLCSFIVCIISTGLHVHFSVTNSGQISIREYADFLGLIASSCLLVVSTTGKTGTVMLATNGAAEPLLGEKTEKHSEILKESPYGKATLLQLINFSWLNPLFAVGYKKPLEQSDIPDVDIKDSAEFLTCSFDESLRKVKEEDGTANPSIYKAIYLFARKKAALNALFAVVNASASYVGPYLITDFVDFLGEKEARGLKSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLGVMTLNIPLTKIQKRYQAKIMDAKDNRMKATSEVLRNMRTLKLQAWDSQFCERIEALRNVEYNWLTKSLRQAAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLREEEIQHDVIENVAKERTEFDVVIERGRFSWDPDSTTPTIDEIELRVKRGMKVAVCGSVGSGKSSLLSGILGEIYKQSGNVKISGTKAYVPQSAWILTGNIRDNITFGKEYNADKYDKTVEACALKKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADIYLFDDPFSAVDAHTGTHLFKECLMGILKEKTIIFVTHQVEFLPAADLILVMQNGRIAQAGKFEDLLKQNIGFEVLVGAHSKALESIVVAENSSRTSFNSIAEEGESNLNSRSSLQHDKVQDNPPEDKGNDGKLVQEEERETGSIAKEVYWTYLTTVKGGMFVPLILLAQSSFQILQIASNYWMAWVCPTSSDAKPIFDMNFILLIYMALSVAGSFCVLLRAMMVLNAGLWTAQSLFTKMLHSVLRAPMSFFDSTPAGRILNRASTDQSVLDLEMANKVGWCAFSIIQILGTIAVMCQVAWQVFVIFIPVTAVCIWYQRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLLLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERILQYTNIKSEAPLVIEDRRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRAKEEKLESPVVENGDNWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDGVLQNIISQEFKHRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDEPSRLLEREDSFFFKLIKEYSGRSQSFNSLATQHVQSREEL 1512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00290 1512 CDD ABC_6TM_ABCC_D1 315 603 IPR044746 GO:0140359
Viun10g00290 1512 MobiDBLite consensus disorder prediction 892 912 - -
Viun10g00290 1512 MobiDBLite consensus disorder prediction 876 891 - -
Viun10g00290 1512 Pfam ABC transporter transmembrane region 316 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00290 1512 Pfam ABC transporter transmembrane region 948 1182 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00290 1512 SUPERFAMILY ABC transporter transmembrane region 310 611 IPR036640 GO:0005524|GO:0016020
Viun10g00290 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 938 1218 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00290 1512 CDD ABC_6TM_ABCC_D2 936 1230 IPR044726 GO:0140359
Viun10g00290 1512 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 314 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun10g00290 1512 CDD ABCC_MRP_domain1 629 829 - -
Viun10g00290 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1257 1489 IPR003439 GO:0005524
Viun10g00290 1512 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 852 IPR003439 GO:0005524
Viun10g00290 1512 Pfam ABC transporter 648 781 IPR003439 GO:0005524
Viun10g00290 1512 CDD ABCC_MRP_domain2 1253 1473 - -
Viun10g00290 1512 Gene3D - 627 858 IPR027417 -
Viun10g00290 1512 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 237 1492 - -
Viun10g00290 1512 Gene3D ABC transporter type 1, transmembrane domain 900 1236 IPR036640 GO:0005524|GO:0016020
Viun10g00290 1512 Gene3D ABC transporter type 1, transmembrane domain 285 613 IPR036640 GO:0005524|GO:0016020
Viun10g00290 1512 FunFam ABC transporter C family member 5 899 1236 - -
Viun10g00290 1512 FunFam ABC transporter C family member 10 297 611 - -
Viun10g00290 1512 Pfam ABC transporter 1272 1420 IPR003439 GO:0005524
Viun10g00290 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 845 IPR027417 -
Viun10g00290 1512 SUPERFAMILY ABC transporter transmembrane region 924 1237 IPR036640 GO:0005524|GO:0016020
Viun10g00290 1512 MobiDBLite consensus disorder prediction 876 912 - -
Viun10g00290 1512 FunFam ABC transporter C family member 5 614 861 - -
Viun10g00290 1512 ProSitePatterns ABC transporters family signature. 754 768 IPR017871 GO:0005524|GO:0016887
Viun10g00290 1512 Coils Coil 476 496 - -
Viun10g00290 1512 Gene3D - 1238 1490 IPR027417 -
Viun10g00290 1512 SMART AAA_5 656 829 IPR003593 GO:0016887
Viun10g00290 1512 SMART AAA_5 1281 1473 IPR003593 GO:0016887
Viun10g00290 1512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1483 IPR027417 -
Viun10g00290 1512 FunFam ABC transporter C family member 3 1238 1490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00290 Viun-Chr10 2380583 2392996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00290 608 843 Calmodulin-binding Proteins AT2G36910 30.830 2.55e-23 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00290 - - gmx:100809749 2722.19