Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00280 ATGGGAACAAAGGTAAAGAAAGCTATGAAGAAGAATATGAAAAAGGCTTCCTCTAACAACCCATCTCAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGGTCGCAAGCTCGCCGAACAGAAGCCGCCGGAGAATACCTCCACGGTACTGTACGTGTCCAGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGTCAATTTGGAACCGTCAAGAGGTTGAGAATCGCGAGAAATAAAAAGACAGGAAAATCAAGACATTTTGGGTACATAGAATTTGAATCTCCTGAGGTAGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTCGAGCACCTTCTCCAAGTTCATGTTGTACCTCCGGAGCATGTTCATTCAAGATTATGGAAAGGATTCAGTTATCGTCACAAGCCAGTGGATTATGTCCGAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGAAGAGCACAAAAAGTTGGTGGATAGGATTGTAAGACATGACCAAAAACGACGGAAAAGGATAGAGGCTGCTGGCATTGATTACGAATGCCCTGAGATTATTGGTAACCTCCAGCCTGCTCCAAAGAAAATAAAATTTGATGACTGA 630 0.4302 MGTKVKKAMKKNMKKASSNNPSQGADFLPLEGGPGRKLAEQKPPENTSTVLYVSRIPHGFYEKEMEGYFGQFGTVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPEHVHSRLWKGFSYRHKPVDYVRIERKRHDKERTLEEHKKLVDRIVRHDQKRRKRIEAAGIDYECPEIIGNLQPAPKKIKFDD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00280 209 CDD RRM_NIFK_like 50 123 - -
Viun10g00280 209 SUPERFAMILY RNA-binding domain, RBD 17 135 IPR035979 GO:0003676
Viun10g00280 209 Gene3D - 3 124 IPR012677 -
Viun10g00280 209 Coils Coil 147 167 - -
Viun10g00280 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Viun10g00280 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 8 208 - -
Viun10g00280 209 MobiDBLite consensus disorder prediction 1 45 - -
Viun10g00280 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Viun10g00280 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00280 Viun-Chr10 2242116 2244494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00280 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 31.081 6.73e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00280 K14838 - gmx:100814276 359.377