Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00273 ATGGCATCAACGTTTCTCACCCTTCCAACTCCATTCCTACACAAAACCAATGCCATTTCTTTCTCTAACAAGAGACCCTCTTTTTCCCGGAGGAGCTCTCTGAAGATCAATGCAATTGCCAAAAAGTGGGAACCCACTAAGGTTGTGCCTCAGGCTGATAGAGTTCTTATTCGTTTGGAAGAGCTATCAGATAAAACAGCTGGGGGAGTTTTGCTGCCCAAGTCAGCTGTGAAATTTGAGCGATATCTTGTGGGAGAAATCCTAAATGTTGGTGCTGAGGTTGGAGAATTAAAGGCTGGAACAAAGGTACTATTCACTGACATGAGTGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACTGCTTCTGCAAAGCTAGTGACTTGTTAGCAGTGGTTGAGTAG 405 0.4469 MASTFLTLPTPFLHKTNAISFSNKRPSFSRRSSLKINAIAKKWEPTKVVPQADRVLIRLEELSDKTAGGVLLPKSAVKFERYLVGEILNVGAEVGELKAGTKVLFTDMSAYEVDLGTDAKHCFCKASDLLAVVE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00273 134 Pfam Chaperonin 10 Kd subunit 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Viun10g00273 134 SUPERFAMILY GroES-like 47 134 IPR011032 -
Viun10g00273 134 CDD cpn10 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Viun10g00273 134 FunFam 10 kDa chaperonin 43 134 - -
Viun10g00273 134 Gene3D GroES chaperonin 43 134 IPR037124 GO:0006457
Viun10g00273 134 PANTHER 10 KDA HEAT SHOCK PROTEIN 46 132 IPR020818 GO:0005524|GO:0006457|GO:0044183
Viun10g00273 134 SMART Cpn10_2 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00273 Viun-Chr10 2104750 2108120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00273 15 134 Calmodulin-binding Proteins AT5G20720 27.612 3.88e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00273 K04078 - gmx:100306026 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00273 10 2104750 2108120 Viun10g00273 10 2104750 2108120 ECH