Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00272 ATGGCTTCGCCGCCACCGTTAACGCTAAACGTCATCGGATCAGACACGGACAACGCGTTCCCAACCGTCGCTTCCAGTTCCCTAACGCCGCCGTCACCGCGCCGTTCGTCTCCGTTACAGAGCCTCAGTCCCAGCATTCTCATCATCGTCACGGTCCTCGCCGTCACCGTTATTGTTTCTCTCGCGCTCTGCTTCCTCCTCCGCCACCTCAACCGCCGCTGCCTCCGCCGCTTCTCCTCCTCCTCCGCCGCGCCCTCCGCATCCGCCTCCGCCACGCCGATGTTCTCCTCCAGCCGCCGCATCTCGCCGGAGATTGTGCACTCCTCGTCCACCGCCGCTGCCGCCGCCTCGGTCATCGACACGCTGCCGCTATTCACGTTCTCCTCCGTCACGCGCCGCTCGTCCTCCGCCGCCGCCGACTGCGCGGTCTGCCTCTCCAAGTTCCACCACCACGACCTCCTCCGCCTGCTCCCTCTCTGCTGCCACGCCTTCCACGCCGAGTGCATCGACACCTGGCTCCAGTCCAACCTCTCGTGTCCGCTCTGCCGCTCTCCCATCGCCGCCGCGGAATCCGACCTTGCGAAAATCCTCCGCCCACCGTCCTCCGCCGCCGGTAGCAGCGACAGCTTCCGCCTCGAGTTAGGCAATATCAGTCGCCGTGGCGCGGAAGGCGCCGGAGCCACCGCCGCTCGCGGCGATTCACGGTCCCGGTCCTATTCCATTGGTTCGTTCGATTATTTGGTGGACGACGAGTCTGAGGTTGCGTTCAGCCACGCTCGCAGGAGGAGTGAGGACGATGCGAAGGAGTTTCCGGCCACCGAAGGTCAGACTCCGTCCACTCACAACGAGGCCAGTCTGGCCGGTGAGGTCGCCGGCGTTAGGAGCTGGCTTAAGGACTACATGGATAGGTTTTCTGCTTCTATCTCTTCAAGAACGGCATCGTTTCGAAGCTCTGGAAGGTTCTTCAGCGGTGGTGGGAGTAGTCGACGAAGTGACGTCGTTCCGGTGGTGGCTGCGGAATACGACATGGAAGGAAATCGAATCGGCGAAGAAATCAGCGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1089 0.6253 MASPPPLTLNVIGSDTDNAFPTVASSSLTPPSPRRSSPLQSLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRFSSSSAAPSASASATPMFSSSRRISPEIVHSSSTAAAAASVIDTLPLFTFSSVTRRSSSAAADCAVCLSKFHHHDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSPIAAAESDLAKILRPPSSAAGSSDSFRLELGNISRRGAEGAGATAARGDSRSRSYSIGSFDYLVDDESEVAFSHARRRSEDDAKEFPATEGQTPSTHNEASLAGEVAGVRSWLKDYMDRFSASISSRTASFRSSGRFFSGGGSSRRSDVVPVVAAEYDMEGNRIGEEISEMFRWLSGV 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00272 362 CDD RING-H2_EL5-like 140 183 - -
Viun10g00272 362 FunFam E3 ubiquitin-protein ligase ATL4 114 188 - -
Viun10g00272 362 MobiDBLite consensus disorder prediction 258 284 - -
Viun10g00272 362 SUPERFAMILY RING/U-box 120 188 - -
Viun10g00272 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 192 IPR013083 -
Viun10g00272 362 Pfam Ring finger domain 140 183 IPR001841 -
Viun10g00272 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 38 289 - -
Viun10g00272 362 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Viun10g00272 362 SMART ring_2 141 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00272 Viun-Chr10 2091871 2093525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00272 25 212 C3H Transcription Factor Family AT4G28890 34.031 1.32e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00272 K10663 - gmx:100817751 439.113