Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00257 ATGGAAGACGCGTGGGAAACTTGGATTTCTTCTTTGGAAATGGCTGAAGAAGACAAATCCACTGCTCAAGATAACGTCCTCTCTGGGATTTTCCTTGAACCACTAGATTTCTCATTTCACAACTCTTCTACCACCACCATGCTCTCATACGATGATAACAACGATGATAACAGTAACAGTAACAATGTTTTTTCCATGGGAAGTAGTTGCTATGGAGATGCAAGCTTTGATGAGAGGCATGGGAAAATGCTCAAGAGTAATAGCTCAAGCTCCATCATTTCTCATGATGTTGCAAACAACAATGCTTCTTCTTCTTCAGCAGCACCATCCTCATCCACCTTCATCTTGTCCTTTGAAAACTCAACCATGGAACCTTCTCATCATTATTATAATAGACCTAATGATCATGGTGGTTGCCCTAGTTATGCCCTATGTTCTTCACTTTTGAGCTCAGAGAATGACCATGTCTTGAGCACCCCAAAGCCCAAACAAGGTGCCAAGAAGTATAGAAGCTCATCTGAGATTCAAGATCACATCATGGCTGAGAGAAAAAGAAGACAGGAACTCACTGAAAGGTTCATAGCACTTTCTGCCACCATACCTGGATTGAAGAAGACAGACAAGGCCTATGTACTAAGGGAAGCAATGATATACATGAAACAACTTAAAGAGAGAGTGGTTGAGCTAGAAAACCAGAACAAGAGGAAGAGAACAGATTCAAGAATATTGATAAAGAAATATTATTCCCAAGTGTGCTCAAGAGAAGAACAAGAACAAACCAAGTCTCATAGATCAACTCCTCCACTTCCTCAAGTTGAAGCAAGAGTGTTGGAAAAAGAGGTTCTCATTGGAATCCACTGCCACAAACAAAAGGACATTGTGCTCAAAATCATGGCTTTGCTCCAAAATCATCATCTTTCTCTTGCTAGCAGCAGTGTGTTGCCCTTTGGAACTTCCACTCTTAAAGTCACAATCGTTGCTCAGATGGACGAAAAATACTGCATGACAGTGAATAATCTTGTAAAAAGCCTGAGACAAGCTCTTTTAAAAATCACATGA 1059 0.4051 MEDAWETWISSLEMAEEDKSTAQDNVLSGIFLEPLDFSFHNSSTTTMLSYDDNNDDNSNSNNVFSMGSSCYGDASFDERHGKMLKSNSSSSIISHDVANNNASSSSAAPSSSTFILSFENSTMEPSHHYYNRPNDHGGCPSYALCSSLLSSENDHVLSTPKPKQGAKKYRSSSEIQDHIMAERKRRQELTERFIALSATIPGLKKTDKAYVLREAMIYMKQLKERVVELENQNKRKRTDSRILIKKYYSQVCSREEQEQTKSHRSTPPLPQVEARVLEKEVLIGIHCHKQKDIVLKIMALLQNHHLSLASSSVLPFGTSTLKVTIVAQMDEKYCMTVNNLVKSLRQALLKIT 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00257 352 MobiDBLite consensus disorder prediction 154 173 - -
Viun10g00257 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 243 IPR036638 GO:0046983
Viun10g00257 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Viun10g00257 352 Gene3D - 165 239 IPR036638 GO:0046983
Viun10g00257 352 Pfam Helix-loop-helix DNA-binding domain 177 223 IPR011598 GO:0046983
Viun10g00257 352 PANTHER BHLH TRANSCRIPTION FACTOR 41 350 - -
Viun10g00257 352 Coils Coil 212 239 - -
Viun10g00257 352 SMART finulus 179 228 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00257 Viun-Chr10 1955626 1960727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00257 111 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.964 2.15e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g00257 HLH 5.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00257 - - vra:106773267 516.924