Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00251 ATGAAGTGCTTTTACTATTTCAAAGACAAATCTAGAAACGGTAGGCAAAGGTCAGCACCTGAACTGAAGGAGAAGGAGAAACTGGACTTTTCAGGGGCTGAGAGGGTCACCAAGTCTTCAAGCTCATCTGCTTCACCCCGCGGTATACCGGAACTGTATGAGGAGAAGGGTCAGAATCTGAGGGTCTTCTCCCTCTCAGAGCTCAAGCGTGCAACAAGTGATTTCAACAGGCTTTTTAAGATAGGAGAAGGTGGATTTGGCAGTGTGTTTAAAGGTTCAGTGCAGCCTGCTGATGGGAATGGGAATCCTGTTGTAGTTGCCATCAAAAGACTTAACAAGGATGCATTACAGGGTCATAAGCAATGGTTGACTGAAGTTCAATTTCTTGGTGTTGTGGAACACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGATGACGAACGAGGCATCCAGAGACTACTCGTGTATGAATACATGCCGAACAAAAGTTTAGAGTTTCATCTTTTCAATAAAGCTTATGATCCTCTTCCTTGGAAAACTAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTAACTTATCTTCATGAAGAATTAGAAATTCAGGTGATATATCGAGATTTTAAATCTTCAAATATATTACTGGATGAAGAGTATAAGCCAAAGCTTTCTGATTTTGGACTTGCTAGGGAGGGACCAGTAGCTGGTGATACTCATGTTTCAACAGCTGTGATGGGGACATATGGTTATGCTGCTCCAGATTACATTGAGACAGGTCATCTCACAGCCAAGAGTGATGTGTGGAGTTTTGGAGTGGTTTTATATGAAATGCTTACTGGCAGGCGTTCAATGGAAAGAAACAGGCCAAAATCAGAGAAGAAACTGCTGGAGTGGGTGAAGCAATACCCTCCTGACAGCAAGAAGTTTGAGACAATAATCGATCAGCGACTTCAGGGAGAGTATTCCAAGAACGGAGCAAGAAAACTGGCGAAACTCGCCGATCATTGCCTGCGAAAGAGCGCGAAAGATCGGCCGACGATGAGTCAGGTGGTGGAGAGACTGAAGCAGATAATGGAAGACAGTGATGAGGCAGATGACAGAAGTGTAGAGGTATCAGAAAATGGTGAAGCTGAAGCTGAAGTGAAGGGAAATCAATTAGGCTCTTCAGAGTTGTGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAACGTGTGGAGAGTGCTAGCAGAAAAAGATTTATGATCCTTCAGAGAGCCAATGTGTCCTCATAG 1281 0.4364 MKCFYYFKDKSRNGRQRSAPELKEKEKLDFSGAERVTKSSSSSASPRGIPELYEEKGQNLRVFSLSELKRATSDFNRLFKIGEGGFGSVFKGSVQPADGNGNPVVVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDDERGIQRLLVYEYMPNKSLEFHLFNKAYDPLPWKTRLEIALGAAQGLTYLHEELEIQVIYRDFKSSNILLDEEYKPKLSDFGLAREGPVAGDTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEMLTGRRSMERNRPKSEKKLLEWVKQYPPDSKKFETIIDQRLQGEYSKNGARKLAKLADHCLRKSAKDRPTMSQVVERLKQIMEDSDEADDRSVEVSENGEAEAEVKGNQLGSSELWKKRMEHLAKLGERVESASRKRFMILQRANVSS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00251 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Viun10g00251 426 MobiDBLite consensus disorder prediction 12 50 - -
Viun10g00251 426 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Viun10g00251 426 MobiDBLite consensus disorder prediction 362 379 - -
Viun10g00251 426 MobiDBLite consensus disorder prediction 362 389 - -
Viun10g00251 426 MobiDBLite consensus disorder prediction 12 33 - -
Viun10g00251 426 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Viun10g00251 426 PANTHER OS01G0588500 PROTEIN-RELATED 39 359 - -
Viun10g00251 426 SUPERFAMILY Protein kinase-like (PK-like) 58 356 IPR011009 -
Viun10g00251 426 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 161 369 - -
Viun10g00251 426 CDD STKc_IRAK 81 359 - -
Viun10g00251 426 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Viun10g00251 426 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00251 426 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00251 Viun-Chr10 1885667 1890827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00251 1 356 Glycoside Hydrolase AT3G07070 42.742 1.97e-92 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun10g00251 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00251 - - gmx:100784625 740.725