Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00249 ATGGATGAATCATGGGAAAAATGGTTTTCTGATTTGGAAATGGATGATGATGAGTTGCATTTATTCAATGAACACAACATGAACTCTCTTGAGGAAGAATTGATGAAGATAGAGAGTTCAGTGCCTTATTATGATTCATATTTTGCTAACAGCAGCAGCAGCAACAACAACAACATGGGTAATGGTTCATGTTTGGAAAGGAACACACAACATGCGAATTCTAATTCGGAGAAGAACCAAATGGTTATTACACCTTGCACTCTCTCTTTTGAGGACTCCACTGTGGTGTCAAATGTTCCTGATGAATCATTTCATGCAAAGCCTGAGAAGAGAAGAAGCATTTCTCAGACGTCAAAACACATAATGGTTGAGAGGAAGAGGAGAGAGAAAATCAGTACTTTGTTGATAGAACTTTCCGCCATGCTTCCTGGTTTGAAAAAGATGGACAAGTTATCTATTATTAGCAAAACCATTGATTATGTGAAGTATCTACAGAATCGTATAAAAGATTTGCAGGAAGTAAACAATAAGAGAGGATCTATAAAGTACTGCAAAAACAACAACACCAATGTTAACATTTCAGAGAACTCAAACGATTTAGATTCTACCTTTCTCAAAATTGATTCAAGTGTTTCAGGTAAAGATGTAAGAATCTCTGTTATTTGTGAGAAACGAGAACAAATTGTATCAGAGCTATTGTCCAAGCTTGCATCTCACAATCTCTCCATGGTTTGTAGCAGTGTTTTGCCACTGGGGAGTTCTATTCTGAACATTTCTATCATTTGCAAGGTGGAACAGTGCAGCATGGCAATAGATGAACTAGTGAAAAGTTTATATGAGGATTTATTGAAATTGTATAAGTTGCAAAATTAA 873 0.3597 MDESWEKWFSDLEMDDDELHLFNEHNMNSLEEELMKIESSVPYYDSYFANSSSSNNNNMGNGSCLERNTQHANSNSEKNQMVITPCTLSFEDSTVVSNVPDESFHAKPEKRRSISQTSKHIMVERKRREKISTLLIELSAMLPGLKKMDKLSIISKTIDYVKYLQNRIKDLQEVNNKRGSIKYCKNNNTNVNISENSNDLDSTFLKIDSSVSGKDVRISVICEKREQIVSELLSKLASHNLSMVCSSVLPLGSSILNISIICKVEQCSMAIDELVKSLYEDLLKLYKLQN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00249 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Viun10g00249 290 SMART finulus 121 170 IPR011598 GO:0046983
Viun10g00249 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 109 176 IPR036638 GO:0046983
Viun10g00249 290 PANTHER BHLH TRANSCRIPTION FACTOR 17 284 - -
Viun10g00249 290 Gene3D - 115 180 IPR036638 GO:0046983
Viun10g00249 290 Pfam Helix-loop-helix DNA-binding domain 118 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00249 Viun-Chr10 1853912 1856721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00249 7 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 28.349 1.80e-24 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g00249 HLH 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00249 - - vun:114165768 553.132