Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00248 ATGGATGAATCATGGGAAAAATGGTTTTCTAATTTGGAAATGGGTGATGATGAGTTTCATGTGTTCAATGAACACGACATGATGATATCTCTTGAGGAAGAATTGATGAAGGGAGAGAGTTCAGTGCCTCATGATTCGGATTCTGCTATCAACAACGACAACAACAACATGGGCACTGACTCCACTGTGGTTTCAAATGTTGCTGATGAATCGTTCCATGCAAAAACTGAGAAGAGAAGAAGCAATTTTCAGGCGCAACAGCACATAATGGCAGAGAAGAAGAGGAGAGAGAAACTCAGCACTATGTTCGTAGAACTTTCAACCATGGTTCCTGGTTTGAAAAAGGTTGGATCAAGATATGTGTCATTTGGAGATGCTTCAAAGGCTGTAGCAAACGGTCGAGACACAATTTTGTACTTGCAAAAGGATGGTTGA 435 0.4092 MDESWEKWFSNLEMGDDEFHVFNEHDMMISLEEELMKGESSVPHDSDSAINNDNNNMGTDSTVVSNVADESFHAKTEKRRSNFQAQQHIMAEKKRREKLSTMFVELSTMVPGLKKVGSRYVSFGDASKAVANGRDTILYLQKDG 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00248 144 MobiDBLite consensus disorder prediction 44 62 - -
Viun10g00248 144 Gene3D - 69 143 IPR036638 GO:0046983
Viun10g00248 144 PANTHER BHLH TRANSCRIPTION FACTOR 34 119 - -
Viun10g00248 144 MobiDBLite consensus disorder prediction 40 62 - -
Viun10g00248 144 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 114 IPR036638 GO:0046983
Viun10g00248 144 Pfam Helix-loop-helix DNA-binding domain 86 113 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00248 Viun-Chr10 1840127 1842306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00248 80 137 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22750 48.276 1.35e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g00248 HLH 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00248 - - vun:114166929 285.034