Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00247 ATGGCACCGAAAGGAGTCCCACATCGCTCAGTTTGGGCTTCTCCCCTCAACAGCATAACCATATATAAACTGCACTACAGCCATGTTCCAGGTTTGATGGACAAAATGGATGATGAGTCATGGCAAAGATGGGTTTCAATTTTGGAGGAAAGTGATTGGCATATTCTAAGTGATTTTGACATGAACTCTGTTGGAGAAGAATTTAACGGAGACAGTTCAATGGTTCCTGCAGAAGAGTCATGCAAAAAAAGCAATTTTTCATCTTTGGAAGAGAACATGCCAAGTCTCACACAACATGCTTCTCCTCAGAAACCAAAGTCTTGTGTTCTGTCGTTTGAGGATTCCACTTCAAAGAAAACAACATGCAAACATGTTGGTGACAACTCAAAGCAGCAGACAGAAGAAAAAAGCAGAAAACCCCTCAAGAGGGAAAGAAACTCTTCTCAGACACTTGATCACATAATGGCTGAGAGAAAAAGGAGAGAGAATATCACCAAAATGTTCATCGCTCTTTCTGCCCTTATTCCTGGCTTGAAAAAGACGGACAAGGTTTCTGTTCTTACCAAGGCTATAGAATACGTGAAGTGTCTTGAGCAGCGTGTGAAAGATTTGGAGAAAGAGAAAGAGAAGAGGAAGATAGAATCAGAAGGGTGCATGAAAGTGAGGAAAAGCAACATGGTTGGTTATGAGTTTTCATATGAAGGTGGTGATGATGATGATAAAGCAACGAAGAAATGTTGGAAGGTTGAAGCAAGAGTAGCAGGAAAAGATGTGCTGATCAGAGTAACGTGTGAGATGAAAAGGAACATTGTGCAGAATGTAATGGCGAAGCTTCAAGCTCATAATCTTTCTGTTGTTTGCAGCAATGTTTTGCCTTTTGGGAATTCTGCTCTCACCATTACCAGCATTGCTGAGATGAACCCTAAAGTCACCATGAAAGTGGACAACTTAGTGAAAACGTTGACAGAAGATTTGTCCAAGTGCTGTAACCTGCAATAA 999 0.4104 MAPKGVPHRSVWASPLNSITIYKLHYSHVPGLMDKMDDESWQRWVSILEESDWHILSDFDMNSVGEEFNGDSSMVPAEESCKKSNFSSLEENMPSLTQHASPQKPKSCVLSFEDSTSKKTTCKHVGDNSKQQTEEKSRKPLKRERNSSQTLDHIMAERKRRENITKMFIALSALIPGLKKTDKVSVLTKAIEYVKCLEQRVKDLEKEKEKRKIESEGCMKVRKSNMVGYEFSYEGGDDDDKATKKCWKVEARVAGKDVLIRVTCEMKRNIVQNVMAKLQAHNLSVVCSNVLPFGNSALTITSIAEMNPKVTMKVDNLVKTLTEDLSKCCNLQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00247 332 Coils Coil 187 214 - -
Viun10g00247 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Viun10g00247 332 Pfam Helix-loop-helix DNA-binding domain 153 198 IPR011598 GO:0046983
Viun10g00247 332 Gene3D - 144 221 IPR036638 GO:0046983
Viun10g00247 332 PANTHER BHLH TRANSCRIPTION FACTOR 72 326 - -
Viun10g00247 332 MobiDBLite consensus disorder prediction 78 116 - -
Viun10g00247 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 214 IPR036638 GO:0046983
Viun10g00247 332 MobiDBLite consensus disorder prediction 117 153 - -
Viun10g00247 332 SMART finulus 154 203 IPR011598 GO:0046983
Viun10g00247 332 MobiDBLite consensus disorder prediction 70 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00247 Viun-Chr10 1820669 1823183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00247 43 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.188 4.42e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun10g00247 HLH 2.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00247 - - vun:114166535 658.677