Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00243 ATGGGTAGAAGACCAGCAAGGTGCTATCGTCAAATTAAGAACAAACCGTACCCGAAATCGCGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGGATTTATGATGTTGGCATGAAGAAGAAAGGTGTTGATGAATTTCCCTTCTGTGTGCATCTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCTCTTGAGGCTGCTAGGATTGCGTGCAACAAGTACATGGCAAAATTTGCTGGGAAGGATGCATTCCACTTGAGGGTTAGGGTTCATCCCTTCCATGTTCTTAGGATCAACAAGATGCTTTCGTGTGCCGGAGCTGATAGGCTCCAGACCGGCATGAGAGGTGCCTTTGGAAAGCCACAGGGTACTTGTGCTAGAGTGGCTATTGGCCAGGTCCTGCTCTCTGTCCGCTGCAAGGACAGCAACAGCCACCATGCTCAGGAGGCCCTCCGCCGTGCTAAATTCAAGTTCCCCGGCCGCCAAAAGATTATTGTTAGCAGGAAGTGGGGGTTCACCAAGTTTAACCGCACTGACTATTTGAAGTTCAAGTCAGAGAACAGGATTATGCCTGATGGTGTCAATGCCAAGCTTCTTGGGTGCCATGGACCATTGGCTAATCGCCAACCAGGAAGAGCCTTTTTGTCCAGTGCTACCGCCTAG 666 0.497 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRTDYLKFKSENRIMPDGVNAKLLGCHGPLANRQPGRAFLSSATA 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00243 221 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 NCBIfam 50S ribosomal protein L16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 FunFam 60S ribosomal protein L10 1 206 - -
Viun10g00243 221 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 PANTHER 60S RIBOSOMAL PROTEIN L10 1 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Viun10g00243 221 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00243 Viun-Chr10 1806065 1808085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00243 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.818 2.83e-145 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00243 K02866 - gmx:100815571 449.514