Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00242 ATGCTTATGCTTTCAACATCCATTCTCACAACAAACACTATGCAGCTCACACACCTGTGCCTTGTCATGCCCTCAGACTATGATAAACTAGAGCCACTTCATGCAACCCCACCAAAGCATAAAGGGACACAGAAAAAGGTTAAGGCCAAAGGGACATGTGGAGGCCATGTTGCTGCTACCCTTCAAGGTTCCTTAACAAGGTTGTGTGAGTCAAAGTGGTGGAATCTATGCCAACATGGTGCAAGACAAAGCAAGGCCTCATCATCATCTTGTGTGTTTCATGACATGGAGGGTGTGCAACTCTCTTCAAAGATTGGAAGGGACAGCAACAATCCAAGGATTTTCAGCTATGCCGAACTTTACATAGGTTCAAGGGGTTTCTCTGAGGAGGAGGTTCTGGGAAGTGGAGGTTTTGGCAAAGTGTACAAAGCTGTTATGCCGAGTGATGGAACAGTGGTGGCTGTGAAGTGCTGCTTGGCAGGGAAAGGTGGCCAGTTTGAGAAGACTTTTGCAGCAGAACTAGCAGCAGTGGCACACCTTCGCCACAAGAACCTTGTTCCCTTGAGGGGTTGGTGTGTTTTTGAGGATCAACTTTATCTTGTGTATGATTACATGCCTAATCTCAGCCTTGACAGGGTGCTGTTTCGGAAGAACTTGAAAGAGGAGGCACTTGGGTGGGTGAGGCGTGGGAAAATTGTGAAGGGTTTGGCTTGTGCGTTGCACTATCTGCATGAGCAGTTGGAGACTCAGATCATTCACAGGGATGTGAAGACCAGCAATGTGATGCTTGATTCCCACTACAATGCTAGGTTGGGGGATTTTGGCTTGGCAAGGTGGCTTGAGCATGACCTTGTTGAGTATGAATATGAGACTGGGAAAGCATCATCAGCAGCAGCATCAAGCAAGTTTGAGCATTTCAGGTTGAGTGAGACCACAAGGATTGGTGGCACAATTGGGTACTTGCCACCAGAGAGCTTCCAGAGAAGGAGTGTTGCAACCTCAAAATCTGATGTTTTCAGCTTTGGAATCGTTGTGTTGGAGGTGGTGTCTGGAAGGAGAGCCATTGATCTCACATACCCAGATGAGAAAATCATCTTGCTTGATTGGATCAGAAGGCTCAGTGATGAAGGGAGGCTCGTTGATGCTGGGGATGCAAGGCTGATGCAAGGTTCCTACAAGGTTTTTGAGATGGAGAACTTGCTTCACATAGGTCTCTTGTGCACACTCCATGACCCTGTGTTGAGACCAAGCATGAAGTGGATTGTAGAAGCACTTTCTGACATGTCAAATGCTATGTCATTGCCATTGCCAACACTTCCTTCGTTTCACTCCCATCCTATGTACATCTCTTTGTCCTCTTCATCTGAGACTAGTCCAAGCAGCTCTAAAGGCACTGGTTCAGGCACAGGAACAGAAAGTTGTAGCAATCGTGCTAGTTTCATTTCAAAGTATGTCACTGCCACAGGAAATACCATATATGTAACAGCTGAAGCTGAACATAGAAACGGTGGAGGTGGAACTAATTCCTCCAAGAGTAGCAAGAGAACGATGCATAAGCAGCCATCATTTTCTGTGGTTCAAACACCTAGGGAGATACCATTCAAGGAGATTGTTTCAGCCACAGAGAACTTCTCAGAATCCAAAAGGGTGGCCGAGTTAGACTTTGGAACTGCTTACCATGGAGTCCTTGATGGCCACTGCCATGTCATGGTGAAACGCCTTGGCTTGAAGACATGCCCTGCACTGCGCCAGAGATTCTCCAATGAGCTGAGAAACCTTGCAAAACTTCGCCACAGGAACTTGGTGCAGCTCAGAGGGTGGTGCACTGAGCAAGGAGAGATGCTTGTGGTGTATGATTACTCAGCTAGAAGATTTCTCAGCCACCAACTTCACCACCATCACAGAAATCCTACTAAAAAGGGTTATTCTGTTCTCAAATGGCACCATAGATACAACATAGTGAAATCACTTGCATCTGCACTTCTCTATCTGCATGAAGAATGGGATGAACAGGTAATTCACAGGAACATAACCTCTTCAGCAGTGACTCTTGAACCTGACATGACACCAAGACTTGGTAGTTTTGCTCTGGCTGAGTTTCTGTCAAGGAATGAGCATGGCCATCATGTGATCAGCACCAGGAACAAGTCTGTTTGTGGGATTTACGGCTACATGTCACCAGAATATGTGGAATCAGGAGAAGCAACGGTGGCTGCTGATGTTTATAGCTTTGGTGTGGTGGTGCTTGAGATTGTGAGTGGACTTAAGGCTGTGGATTTCAGGCAACCTGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGAAAAAGATCACTTGAGGCACTAGCTGATATAAGACTAAATGGAGAGTACAATCACAAGGAGCTAATGAGATTGGTGAGGTTAGGAGTTGCATGCACTCGTTCTGATCCAAAGCTGAGACCAAGCACAAGACAGATAGTGAGCATTCTTGATGGAAATGAGAAATTAATCATGGGGGAGAACTTGGAGAGCAGTGAAGAATGGAGAGAAAGAAACTCTTGCTCTTTGTCTCTGGTCAAGAGGATCCAAGCTCTAGGAATACAATGA 2595 0.4597 MLMLSTSILTTNTMQLTHLCLVMPSDYDKLEPLHATPPKHKGTQKKVKAKGTCGGHVAATLQGSLTRLCESKWWNLCQHGARQSKASSSSCVFHDMEGVQLSSKIGRDSNNPRIFSYAELYIGSRGFSEEEVLGSGGFGKVYKAVMPSDGTVVAVKCCLAGKGGQFEKTFAAELAAVAHLRHKNLVPLRGWCVFEDQLYLVYDYMPNLSLDRVLFRKNLKEEALGWVRRGKIVKGLACALHYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHDLVEYEYETGKASSAAASSKFEHFRLSETTRIGGTIGYLPPESFQRRSVATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEKIILLDWIRRLSDEGRLVDAGDARLMQGSYKVFEMENLLHIGLLCTLHDPVLRPSMKWIVEALSDMSNAMSLPLPTLPSFHSHPMYISLSSSSETSPSSSKGTGSGTGTESCSNRASFISKYVTATGNTIYVTAEAEHRNGGGGTNSSKSSKRTMHKQPSFSVVQTPREIPFKEIVSATENFSESKRVAELDFGTAYHGVLDGHCHVMVKRLGLKTCPALRQRFSNELRNLAKLRHRNLVQLRGWCTEQGEMLVVYDYSARRFLSHQLHHHHRNPTKKGYSVLKWHHRYNIVKSLASALLYLHEEWDEQVIHRNITSSAVTLEPDMTPRLGSFALAEFLSRNEHGHHVISTRNKSVCGIYGYMSPEYVESGEATVAADVYSFGVVVLEIVSGLKAVDFRQPEVLLVKKVHEFEMRKRSLEALADIRLNGEYNHKELMRLVRLGVACTRSDPKLRPSTRQIVSILDGNEKLIMGENLESSEEWRERNSCSLSLVKRIQALGIQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00242 864 PANTHER - 89 427 - -
Viun10g00242 864 MobiDBLite consensus disorder prediction 502 525 - -
Viun10g00242 864 MobiDBLite consensus disorder prediction 453 474 - -
Viun10g00242 864 Gene3D Transferase(Phosphotransferase) domain 1 626 846 - -
Viun10g00242 864 Pfam Protein kinase domain 128 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00242 864 ProSiteProfiles Protein kinase domain profile. 544 832 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00242 864 FunFam Receptor like protein kinase S.2 99 204 - -
Viun10g00242 864 FunFam Receptor like protein kinase S.2 622 849 - -
Viun10g00242 864 FunFam Receptor like protein kinase S.2 504 620 - -
Viun10g00242 864 Gene3D Transferase(Phosphotransferase) domain 1 205 434 - -
Viun10g00242 864 SUPERFAMILY Protein kinase-like (PK-like) 517 826 IPR011009 -
Viun10g00242 864 Gene3D Phosphorylase Kinase; domain 1 505 620 - -
Viun10g00242 864 SMART serkin_6 127 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00242 864 ProSiteProfiles Protein kinase domain profile. 127 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun10g00242 864 Gene3D Phosphorylase Kinase; domain 1 99 204 - -
Viun10g00242 864 MobiDBLite consensus disorder prediction 497 525 - -
Viun10g00242 864 SUPERFAMILY Protein kinase-like (PK-like) 110 459 IPR011009 -
Viun10g00242 864 FunFam Receptor like protein kinase S.2 205 431 - -
Viun10g00242 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Viun10g00242 864 ProSitePatterns Protein kinases ATP-binding region signature. 133 162 IPR017441 GO:0005524
Viun10g00242 864 Pfam Protein tyrosine and serine/threonine kinase 548 826 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00242 Viun-Chr10 1799162 1802090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00242 530 827 Receptor kinase-like Gene Family AT5G55830 36.424 6.65e-52 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun10g00242 PK_Tyr_Ser-Thr 3.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00242 - - gmx:100781955 1437.94