Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00227 ATGCCTCCGAAATCGGCAAAGCGTGGGTCCGTGTCAAGCGCCTCAAAGAGGGGTGGCAGAGGGGGCAGGGGAATCTCCAAGGTTGTGCAGAGCCAGCAGCAGCATGATGCTGCGGAAGAGGTACTGAAGGTAGAGGAAAAACAACCCATTGTTGTTGCTGAGGAGGAACAACCCAAGGCGATGGAAGAAGAGCACCCTGTGGTTGAAGAGAAACAGCTTGTGGTTGAAGAGAAAGAATCTGTTGTGGTGGTTGAGGATAAGGCTATTGATATGAACCAGATGGCTCCGGAGGCTGTGGAAGAAGCGTCCCATCTTGCTAATGGGTTGACCGCTGTGAAAAACAATGAAGAGGAGGTTAAGGAATCGATTGATGAATATGAGAAAGATGAACGCTTAGATTTGGAGGATAATGATCCTGAGTATGAAGCTGAGGAGTATGGTGCAGTTGATTATGATGAGAAAGAAATTGAACAAGATGAGGGTCATGAGGTGGGCAATGAAGTAGAGGAAGAAGAGGCTGAGGATAATTTAGGTGAAGAAGAGGGTGATACAGGTGAGGAAGAGGTTGAAGATGTTCATGACGAACTTGAGGGTGAGGAGGAGCATGAGCATACTGGTGAGGAGCATGAGCACCCTGACTTTGCTGACGTGGATGAAGAGGAACATCGAGAAGTTGTGAAGGAAAGGCGGAAGCGGAAAGAGTTTGAAGTTTTTGTTGGTGGCTTGGACAAGGATGCTACTGAGAGCGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTTGTTACAGAGGTCAGGTTGATGATGAATCCTCAAACTAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTGGAACAAGCTAAACGAGCTGTAGCAGAGCTCAGAAATCCTGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACACTCTATTTGGGGAATATATGCAAGACATGGACAAAGGAAGCTTTAAAAGAGAAGCTGAAACATTATGGAGTTACAAATGTTGAGGATTTGACCTTAGTAGAAGATACTAATGATGAAGGAAAGAACCGTGGGTTTGCATTTTTAGAATTTTCCTCTCGTGCTGATGCTATGGATGCCTTTAAGCGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAAGTTTCTTTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGGCACAGGTTAAAACTGTGTTTATTGATGCATTGCCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTCAAGAAATATGGAGAGATTGAAAAGGTTGAGCTTGCCAGAAACATGCCAGCTGCTCGTAGGAAGGATTATGGGTTTGTTACATTTGGCACACATGATGCTGCGGTAAAATGTGCTGATAGTATTACTGGCACAGAGTTGGGTGAAGGAGACAAGAAGGCAAAAGTTAGAGCCAGGTTGTCAAGACCACTCCAGAGAGGTCGTGGAAAACACATTAGTCGTGGTGACTATCGTTCTGGTCGAGGATCTGGAATGATGACGAGGCCTTCATGGAGCCGACCTGCTCCTCGTACTTTTACTCGTGGTGCAAGAGGAGTTGGAAGTCGTGCTCCACCTGCTAGACCAGTTAGTGTGAGGGATAGACGCCCTATCATGTCCATACCTGCAAGAAGTAGGCCAATACCTCCTCCATCTAGATCTTATGATAGGAGACCAGTTGCACCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATAGTCGGCGAGAGGATATACCACCTCCAAGAAGTAGAGTTCCTGTAGATTATGGCTCAAGGGTGGCTTCTGAAAGAAGACCATCTTACAGGGATTATCCTGCCCGTGGTCCTGGTCCTGGCTACTCTGAGCTCCCTAGAAGCACATCTCGGGCTGCACCTAGGAGGGGCTATGTGGATGATGGATATAGCCAAAGATTTGAGAGGCCTCCACCTCCACCTCCTCCCCATCTAAGCTACCGTGAAGGACGTCCCCGAGATTATGATACTCTGTCCGGCTCAAAACGTTCTTATGCTGCTATAGATGATGTTCCTCCTCGGTATGCTGATACTGGTGCTCGCCAATCAAGAGCACGATTGGACTATGACTATGGTGGTAGTGCTTCACAGTATGGAGATGCTTATGGTGATAGACTTGGAAGATCCAGTATGGGATATGGTGGTAGCAGCAGAAGCTCTATGTCTAGTCAAGATTCACATGGGATGTATAGCAGTCGACAGGGCATGAGTTATGGAGGTTCTTTTACTGGTGGAGATGTTGGTGGCTTGTACTCATCAAGTTATGGCAGTGATTACATTTCCCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCAGTGTATTCGAGCAGGGGCGTGGGTGGTGGTAGCAGTTATATGGGTGGTGGTGGATCGGGATCTTATTATTGA 2457 0.4636 MPPKSAKRGSVSSASKRGGRGGRGISKVVQSQQQHDAAEEVLKVEEKQPIVVAEEEQPKAMEEEHPVVEEKQLVVEEKESVVVVEDKAIDMNQMAPEAVEEASHLANGLTAVKNNEEEVKESIDEYEKDERLDLEDNDPEYEAEEYGAVDYDEKEIEQDEGHEVGNEVEEEEAEDNLGEEEGDTGEEEVEDVHDELEGEEEHEHTGEEHEHPDFADVDEEEHREVVKERRKRKEFEVFVGGLDKDATESDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKRAVAELRNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDTNDEGKNRGFAFLEFSSRADAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALPPSWDEDYVRDLLKKYGEIEKVELARNMPAARRKDYGFVTFGTHDAAVKCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHISRGDYRSGRGSGMMTRPSWSRPAPRTFTRGARGVGSRAPPARPVSVRDRRPIMSIPARSRPIPPPSRSYDRRPVAPAYPKSSMKRDYSRREDIPPPRSRVPVDYGSRVASERRPSYRDYPARGPGPGYSELPRSTSRAAPRRGYVDDGYSQRFERPPPPPPPHLSYREGRPRDYDTLSGSKRSYAAIDDVPPRYADTGARQSRARLDYDYGGSASQYGDAYGDRLGRSSMGYGGSSRSSMSSQDSHGMYSSRQGMSYGGSFTGGDVGGLYSSSYGSDYISRGSDVGGSSYSSVYSSRGVGGGSSYMGGGGSGSYY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00227 818 MobiDBLite consensus disorder prediction 128 197 - -
Viun10g00227 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 383 IPR000504 GO:0003723
Viun10g00227 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 414 479 IPR000504 GO:0003723
Viun10g00227 818 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 305 IPR000504 GO:0003723
Viun10g00227 818 MobiDBLite consensus disorder prediction 494 704 - -
Viun10g00227 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 399 IPR000504 GO:0003723
Viun10g00227 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 412 494 IPR000504 GO:0003723
Viun10g00227 818 Gene3D - 316 398 IPR012677 -
Viun10g00227 818 MobiDBLite consensus disorder prediction 734 754 - -
Viun10g00227 818 SMART rrm1_1 413 488 IPR000504 GO:0003723
Viun10g00227 818 SMART rrm1_1 236 309 IPR000504 GO:0003723
Viun10g00227 818 SMART rrm1_1 316 395 IPR000504 GO:0003723
Viun10g00227 818 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 817 - -
Viun10g00227 818 Gene3D - 402 520 IPR012677 -
Viun10g00227 818 SUPERFAMILY RNA-binding domain, RBD 236 380 IPR035979 GO:0003676
Viun10g00227 818 SUPERFAMILY RNA-binding domain, RBD 407 515 IPR035979 GO:0003676
Viun10g00227 818 MobiDBLite consensus disorder prediction 1 42 - -
Viun10g00227 818 FunFam RNA recognition water-stress protein1 402 523 - -
Viun10g00227 818 Coils Coil 109 132 - -
Viun10g00227 818 FunFam Heterogeneous nuclear ribonucleoprotein Q 316 398 - -
Viun10g00227 818 MobiDBLite consensus disorder prediction 198 225 - -
Viun10g00227 818 Gene3D - 162 315 IPR012677 -
Viun10g00227 818 Coils Coil 28 48 - -
Viun10g00227 818 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 313 IPR000504 GO:0003723
Viun10g00227 818 MobiDBLite consensus disorder prediction 785 818 - -
Viun10g00227 818 CDD RRM_SF 414 488 - -
Viun10g00227 818 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 169 315 - -
Viun10g00227 818 MobiDBLite consensus disorder prediction 586 600 - -
Viun10g00227 818 CDD RRM_SF 317 384 - -
Viun10g00227 818 CDD RRM_SF 237 308 - -
Viun10g00227 818 MobiDBLite consensus disorder prediction 108 225 - -
Viun10g00227 818 MobiDBLite consensus disorder prediction 731 754 - -
Viun10g00227 818 MobiDBLite consensus disorder prediction 785 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00227 Viun-Chr10 1671539 1678285 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00227 230 493 Eukaryotic Initiation Factors Gene Family AT1G49760 23.746 2.98e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00227 - - gmx:100779340 1152.89