Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00221 ATGCTTTTTTACTTCACCCTATACAAATTTAATAATTTTGTTTGCATGCTAATATTGGTTTTAGATGTTATTGGAGTGGTGGATAATGTGAGGTGTAATCCCCAGTCCAAGAATGTTGTATTTCATATAAGGGATTTAAGTTCTGCTGTTATTGGGTGTACCTTGTGGGATTCCTATTACTTTAAATTTATGAGTAATTGGAGGGGAGAAGCAGATTCCTTTGTTGTTGTTGTTATGTTGACTCAAGCTAAGATCAAACCGTCTTCAGGACGGTGGCCAGTGTCAATATCAAATTCGTGGAATGGTTCGAAGTTGTTTATGGGTGATGAATGTTCTGAATTGGTCCGGTTCAAGGAACAATGGATACAACGTTTTGGCAATGAAGTTAGTCAAAGTCAAGAAGCTAGCGAGTTGAGTTCACCGTCTCAATATACTGAACATGAGAAATTTATGTATAAAGCTGTTGTCAGTACAATATCCGAAATCACAACAATGAAGGAGGAAGTGTATTGTGTTACTGTTGCAACTACCGTCAAGTTTAATTTAGGGAATGATGGATGGTGTTATCCAGTATGCAATGGTTGCAGGAAGAAGACTGAAGAGATAGGTGCTTTTAAGTGTGTCATGTGTGGGTTTAATAATGGAAAACCTGGAATTAGATATAAGTTGGAATTACAGGTCTGTGATGGAGACAGTTATGCGAATTTCGTCATGTGGGATCAAGACTGTACTAACTTGATTGGTGTATCAGCTGTTGAGTTAATGAATAAGATGATTGAGGATGGGGAGGATGATCCGAAATGTTTTCCAGAGGATCTTGATGTTATGCTGGGATGTACTCTAGCATTCAAGGTTAGAGTTCAACCAAAAAACAGATCTTCATCGGTCATGAAAGCTTCAAACAGTCTTGAAACCATTGCTTTTATTAGAAGTAAACTTGAGTCAAAGATGAATAATAAAGAGTCCAGCGGTGAAGCTATGTCTGATTCCAGTACCGAGGAAAATTCTAAGGCCAGAGACCAGATACAAATGGGTAAACAGTCTTCTCATGTACCTGTTTGTGACTCTAACAACCAAAATGAATCCTTTCCCATTATTGCTTATGAGTCTCAGACAGATGTGATTAATAAGGAGTCCAGTCCCACAGATACATGTGGTTCCAAGATGAAATCTATGGCAGTTGGTCTGATTAAAAGTGGATCTCGTGGAAAAAATATTAAAGAATCCAGTCCCACTGCAATATATGGGTCCAGTACACAATCGAAAGCTACAAATCTGATAAGAACTGGATTTCATGGAAATAAGGTTAAAGAGTCTGATCCTGTTGATCTAAGTCCCTGCAGTACGCAATCTAAAACACTTGCTTCCACTAAAACTCCAAGTCATACAGATTAA 1395 0.3799 MLFYFTLYKFNNFVCMLILVLDVIGVVDNVRCNPQSKNVVFHIRDLSSAVIGCTLWDSYYFKFMSNWRGEADSFVVVVMLTQAKIKPSSGRWPVSISNSWNGSKLFMGDECSELVRFKEQWIQRFGNEVSQSQEASELSSPSQYTEHEKFMYKAVVSTISEITTMKEEVYCVTVATTVKFNLGNDGWCYPVCNGCRKKTEEIGAFKCVMCGFNNGKPGIRYKLELQVCDGDSYANFVMWDQDCTNLIGVSAVELMNKMIEDGEDDPKCFPEDLDVMLGCTLAFKVRVQPKNRSSSVMKASNSLETIAFIRSKLESKMNNKESSGEAMSDSSTEENSKARDQIQMGKQSSHVPVCDSNNQNESFPIIAYESQTDVINKESSPTDTCGSKMKSMAVGLIKSGSRGKNIKESSPTAIYGSSTQSKATNLIRTGFHGNKVKESDPVDLSPCSTQSKTLASTKTPSHTD 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00221 464 MobiDBLite consensus disorder prediction 443 464 - -
Viun10g00221 464 Gene3D - 5 132 IPR012340 -
Viun10g00221 464 CDD RPA1_DBD_B_like 22 106 - -
Viun10g00221 464 MobiDBLite consensus disorder prediction 401 420 - -
Viun10g00221 464 MobiDBLite consensus disorder prediction 341 356 - -
Viun10g00221 464 Pfam Replication factor-A C terminal domain 174 291 IPR013955 -
Viun10g00221 464 Gene3D - 141 310 IPR012340 -
Viun10g00221 464 SUPERFAMILY Nucleic acid-binding proteins 157 292 IPR012340 -
Viun10g00221 464 MobiDBLite consensus disorder prediction 317 356 - -
Viun10g00221 464 MobiDBLite consensus disorder prediction 403 420 - -
Viun10g00221 464 MobiDBLite consensus disorder prediction 431 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00221 Viun-Chr10 1653377 1658175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00221 20 288 Core DNA Replication Machinery Family AT4G19130 22.069 1.54e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00221 - - vun:114165898 936.021