Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00219 ATGCTTTTTTACTTCACCCTATACAAATTTAATAATTTTGTTTGCATGCTAATATTGGTTTTAGATGTTATTGGAGTGGTGGATAATGTGAGGTGTAATCCCCAGTCCAAGAATGTTGTATTTCATATAAGGGATTTAAGTTCTGCTGTTATTGGGTGTACCTTGTGGGATTCCTATTACTTTAAATTTATGAGTAATTGGAGGGGAGAAGCAGATTCCTTTGTTGTTGTTGTTATGTTGACTCAAGCTAAGATCAAACCGTCTTCAGGACGGTGGCCAGTGTCAATATCAAATTCGTGGAATGGTTCGAAGTTGTTTATGGGTGATGAATGTTCTGAATTGGTCCGGTTCAAGGAACAATGGATACAACGTTTTGGCAATGAAGTTAGTCAAAGTCAAGAAGCTAGCGAGTTGAGTTCACCGTCTCAATATACTGAACATGAGAAATTTATGTATAAAGCTGTTGTCAGTACAATATCCGAAATCACAACAATGAAGGAGGAAGTGTATTGTGTTACTGTTGCAACTACCGTCAAGTTTAATTTAGGGAATGATGGATGGTGTTATCCAGTATGCAATGGTTGCAGGAAGAAGACTGAAGAGATAGGTGCTTTTAAGTGTGTCATGTGTGGGTTTAATAATGGAAAACCTGGAATTAGATATAAGTTGGAATTACAGGTCTGTGATGGAGACAGTTATGCGAATTTCGTCATGTGGGATCAAGACTGTACTAACTTGATTGGTGTATCAGCTGTTGAGTTAATGAATAAGATGATTGAGGATGGGGAGGATGATCCGAAATGTTTTCCAGAGGATCTTGATGTTATGCTGGGATGTACTCTAGCATTCAAGAATAATAAAGAGTCCAGCGGTGAAGCTATGTCTGATTCCAGTACCGAGGAAAATTCTAAGGCCAGAGACCAGATACAAATGGGTAAACAGTCTTCTCATGTACCTGTTTGTGACTCTAACAACCAAAATGAATCCTTTCCCATTATTGCTTATGAGTCTCAGACAGATGTGATTAATAAGGAGTCCAGTCCCACAGATACATGTGGTTCCAAGATGAAATCTATGGCAGTTGGTCTGATTAAAAGTGGATCTCGTGGAAAAAATATTAAAGAATCCAGTCCCACTGCAATATATGGGTCCAGTACACAATCGAAAGCTACAAATCTGATAAGAACTGGATTTCATGGAAATAAGGTTAAAGAGTCTGATCCTGTTGATCTAAGTCCCTGCAGTACGCAATCTAAAACACTTGCTTCCACTAAAACTCCAAGTCATACAGGAAAGATTAAAGAACCTAGGTGTAATAAAAATACCGAAGCTGACAATGCCATGTTGACTGTGAGTGGTTCAGAAGATCATGATCCTTATATTGATTTTTGTGTTACCCCTACAAAGGACTTATTGCTGGACTTTGAAGTTGATTGCGACCACCTTGAAGATATACCAAGTGTAGAATTTTCGAGGTCCAAGACTAAGAAACGAATGAAACAGGAAAAACATTAA 1515 0.3815 MLFYFTLYKFNNFVCMLILVLDVIGVVDNVRCNPQSKNVVFHIRDLSSAVIGCTLWDSYYFKFMSNWRGEADSFVVVVMLTQAKIKPSSGRWPVSISNSWNGSKLFMGDECSELVRFKEQWIQRFGNEVSQSQEASELSSPSQYTEHEKFMYKAVVSTISEITTMKEEVYCVTVATTVKFNLGNDGWCYPVCNGCRKKTEEIGAFKCVMCGFNNGKPGIRYKLELQVCDGDSYANFVMWDQDCTNLIGVSAVELMNKMIEDGEDDPKCFPEDLDVMLGCTLAFKNNKESSGEAMSDSSTEENSKARDQIQMGKQSSHVPVCDSNNQNESFPIIAYESQTDVINKESSPTDTCGSKMKSMAVGLIKSGSRGKNIKESSPTAIYGSSTQSKATNLIRTGFHGNKVKESDPVDLSPCSTQSKTLASTKTPSHTGKIKEPRCNKNTEADNAMLTVSGSEDHDPYIDFCVTPTKDLLLDFEVDCDHLEDIPSVEFSRSKTKKRMKQEKH 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00219 504 Gene3D - 141 314 IPR012340 -
Viun10g00219 504 CDD RPA1_DBD_B_like 22 106 - -
Viun10g00219 504 Gene3D - 5 132 IPR012340 -
Viun10g00219 504 MobiDBLite consensus disorder prediction 288 323 - -
Viun10g00219 504 Pfam Replication factor-A C terminal domain 174 263 IPR013955 -
Viun10g00219 504 SUPERFAMILY Nucleic acid-binding proteins 157 274 IPR012340 -
Viun10g00219 504 MobiDBLite consensus disorder prediction 308 323 - -
Viun10g00219 504 MobiDBLite consensus disorder prediction 410 429 - -
Viun10g00219 504 MobiDBLite consensus disorder prediction 400 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00219 Viun-Chr10 1653356 1658175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00219 20 254 Core DNA Replication Machinery Family AT4G19130 23.047 3.08e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00219 - - vun:114165898 1013.45