Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00186 ATGGATGAGTGTATATATATTATTAGTTCGTCAGATGATGATGATGATGAGTTGGAGGAGATAGATGTTCGAAAGAGAACTCTTCCGGAATGGGCCACAACTACTGAAAGGAGTTCAGATTATGGTAGGCGGGGTAATTCTTCAACAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAGTGTGTATAATCATTCACAAACCAAACCTCTTACACTACCTGTTTCCAGTTCCAATGCACTAAACCACAGAATTGCACGAAGAGATGAACCTTCCTACCATGCTCAGAATGGAAACACAGGTCAGCAACAAACAGTTAATTCCAGAATTTCAAAGTCTCATAGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGCAACAAGGGCTCTTCCTTCTCCTTTATTTGCGTCAGACATCCGATTAAGCAACTTAAAAGATAGCACAGACAATAGTCATCTTCATGATACATATAAGAATCGTCGCCCGGGAGTAGGGTCTAGCATATCCGGTGATAGGGGCTACATTCATGATAGTTTTTTCAGGGGTGGTGACGAAGGTCATTTATTGTATCAAAATGGCGGGAACAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGGCCATAACTCCACACTTTGCAATTTCTAGTGAATCTGCATATCGTTCTGGAATAGGTGATGAAAGGTCTGCCGAAAATGACGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTTCTGGTGTATTGTCAGTCTCTCTTCTGAGACATCAGAGGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGCGCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAACGGTGGTATAAATGTGGAAAAGCATAAAAATAGTGTGGAAGCTAATGATTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCTTAGTTGTCTGCCCTGCTAGTGTTATGCGGCAATGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAGTCATGTAGAACTTGCAAAGTTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCTACCATTAGTTGAGGATGATGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCTCCTGAGTTTTCTGTCAGAAAACGGAAAAAACCATTTAACGGAAATAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTTCGGAATGTGGTTCTGGTCCTCTTGCAAGAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCATAGAACTCAGGTGGCTCGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGCATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAAATTCCGAGCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAGTCAATTTGCCTCCTAAAACAATTGATCTCAATAAAGTGGATTTCTCCGTTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCATTAAATTTAAGGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATCGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTAATTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCAATGATACCCCTGATCGCGCTGTTATTACAATGTGTGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACGTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAGGAGTTGTATCTCTGATGATGGAGGCACTTCTAGCTCTTCAAATTCACATCTTAGTGATTATACGCAAGTTCAGCGGGATGATTACATTTCATCTAAAATCCAAGCTGTTCTTGACGTTTTGCAGTCAAATTGTAACGTGAAAATATCTAATTCTGACTTACCGAACTCTGGATGTTGTAGAGATTCGCCGTCGTCGTCTTCTGTTGATCTAGATGTTGATGACAGTGATTCAGAGGTTAAGATTGCAAAACACACCAAAAAGGGTTCAGAGTCCACAACTGAAGGATCCATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGTCATCATTGTGTCAATTTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTAGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTGGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAAACTCGTCCTGTTACCGTGACAAGGATTACTATAAAAGATACAGTTGAAGATCGGATACTGTCTCTTCAGGATGAGAAGAGAAAAATGGTTGCATCTGCTTTCGGGGAAGACCATGCTGGTGGGTCTGGAACTCGACTTACAGTGGATGATCTGAAATATCTGTTCATGGTGTAG 3051 0.4038 MDECIYIISSSDDDDDELEEIDVRKRTLPEWATTTERSSDYGRRGNSSTGANSSNLSSSSVYNHSQTKPLTLPVSSSNALNHRIARRDEPSYHAQNGNTGQQQTVNSRISKSHSADYEKMSSQQAFKRTLPSTLQPSATRALPSPLFASDIRLSNLKDSTDNSHLHDTYKNRRPGVGSSISGDRGYIHDSFFRGGDEGHLLYQNGGNRILPPSLVLGKAITPHFAISSESAYRSGIGDERSAENDERLIYEAALQDISQPKTEYDLPSGVLSVSLLRHQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVRNHKTEALNLDDDDDNGGINVEKHKNSVEANDLFPSREPSSSTQAPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKSHVELAKFDVVLTTYSIVTNEVPKLPLVEDDDIEDKNGERFGLSPEFSVRKRKKPFNGNKKGKKGRKGIDSSSECGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAAYKSFYNTIKVPISRNSEQGYKKLQAVLRAIMLRRTKGTLLDGKPIVNLPPKTIDLNKVDFSVEERAFYTKLESDSRIKFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFNCLDATFTICHVCNDTPDRAVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVFSKVTLRSCISDDGGTSSSSNSHLSDYTQVQRDDYISSKIQAVLDVLQSNCNVKISNSDLPNSGCCRDSPSSSSVDLDVDDSDSEVKIAKHTKKGSESTTEGSIKAIVFSQWTSMLDLVESSLCQFGILYRRLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00186 1016 MobiDBLite consensus disorder prediction 9 77 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 32 77 - -
Viun10g00186 1016 ProSiteProfiles Zinc finger RING-type profile. 709 748 IPR001841 -
Viun10g00186 1016 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 52 1015 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 92 124 - -
Viun10g00186 1016 SMART helicmild6 875 958 IPR001650 -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 467 490 - -
Viun10g00186 1016 Gene3D - 363 447 IPR038718 -
Viun10g00186 1016 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 281 555 IPR014001 -
Viun10g00186 1016 Pfam Helicase conserved C-terminal domain 861 958 IPR001650 -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 818 837 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 328 376 - -
Viun10g00186 1016 Pfam SNF2-related domain 284 671 IPR000330 GO:0005524|GO:0140658
Viun10g00186 1016 Gene3D - 248 329 IPR038718 -
Viun10g00186 1016 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 845 1011 IPR001650 -
Viun10g00186 1016 Gene3D - 608 1015 IPR027417 -
Viun10g00186 1016 SMART ring_2 709 747 IPR001841 -
Viun10g00186 1016 SMART ultradead3 271 572 IPR014001 -
Viun10g00186 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 593 IPR027417 -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 157 181 - -
Viun10g00186 1016 CDD DEXDc_SHPRH-like 275 593 - -
Viun10g00186 1016 Pfam Zinc finger, C3HC4 type (RING finger) 708 753 - -
Viun10g00186 1016 ProSitePatterns Zinc finger RING-type signature. 724 733 IPR017907 -
Viun10g00186 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 759 IPR013083 -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 818 835 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 157 171 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 328 354 - -
Viun10g00186 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 602 1015 IPR027417 -
Viun10g00186 1016 CDD SF2_C_SNF 859 967 - -
Viun10g00186 1016 Gene3D - 484 606 IPR038718 -
Viun10g00186 1016 SUPERFAMILY RING/U-box 707 766 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 89 124 - -
Viun10g00186 1016 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 474 605 - -
Viun10g00186 1016 MobiDBLite consensus disorder prediction 356 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00186 Viun-Chr10 1393560 1405681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00186 1 916 RAD5 or RAD16-like Gene Family AT1G50410 52.687 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun10g00186 SNF2_N 6.8e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00186 - - gmx:100795142 1579.3