Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00185 ATGGATGAGTGTATATATATTATTAGTTCGTCAGATGATGATGATGATGAGTTGGAGGAGATAGATGTTCGAAAGAGAACTCTTCCGGAATGGGCCACAACTACTGAAAGGAGTTCAGATTATGGTAGGCGGGGTAATTCTTCAACAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAGTGTGTATAATCATTCACAAACCAAACCTCTTACACTACCTGTTTCCAGTTCCAATGCACTAAACCACAGAATTGCACGAAGAGATGAACCTTCCTACCATGCTCAGAATGGAAACACAGGTCAGCAACAAACAGTTAATTCCAGAATTTCAAAGTCTCATAGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGCAACAAGGGCTCTTCCTTCTCCTTTATTTGCGTCAGACATCCGATTAAGCAACTTAAAAGATAGCACAGACAATAGTCATCTTCATGATACATATAAGAATCGTCGCCCGGGAGTAGGGTCTAGCATATCCGGTGATAGGGGCTACATTCATGATAGTTTTTTCAGGGGTGGTGACGAAGGTCATTTATTGTATCAAAATGGCGGGAACAGGATTCTTCCACCATCTTTGGTGCTTGGAAAGGCCATAACTCCACACTTTGCAATTTCTAGTGAATCTGCATATCGTTCTGGAATAGGTGATGAAAGGTCTGCCGAAAATGACGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTTCTGGTGTATTGTCAGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGCGCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAACGGTGGTATAAATGTGGAAAAGCATAAAAATAGTGTGGAAGCTAATGATTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACCTTAGTTGTCTGCCCTGCTAGTGTTATGCGGCAATGGGCCAGGGAACTTGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAGTCATGTAGAACTTGCAAAGTTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCTACCATTAGTTGAGGATGATGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCTCCTGAGTTTTCTGTCAGAAAACGGAAAAAACCATTTAACGGAAATAAGAAGGGTAAAAAAGGTAGAAAAGGAATTGACAGTTCTTCGGAATGTGGTTCTGGTCCTCTTGCAAGAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCATAGAACTCAGGTGGCTCGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGCATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAAATTCCGAGCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAGTCAATTTGCCTCCTAAAACAATTGATCTCAATAAAGTGGATTTCTCCGTTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCATTAAATTTAAGGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATCGATTCTGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTAATTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCAATGATACCCCTGATCGCGCTGTTATTACAATGTGTGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACGTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAGGAGTTGTATCTCTGATGATGGAGGCACTTCTAGCTCTTCAAATTCACATCTTAGTGATTATACGCAAGTTCAGCGGGATGATTACATTTCATCTAAAATCCAAGCTGTTCTTGACGTTTTGCAGTCAAATTGTAACGTGAAAATATCTAATTCTGACTTACCGAACTCTGGATGTTGTAGAGATTCGCCGTCGTCGTCTTCTGTTGATCTAGATGTTGATGACAGTGATTCAGAGGTTAAGATTGCAAAACACACCAAAAAGGGTTCAGAGTCCACAACTGAAGGATCCATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGTCATCATTGTGTCAATTTGGTATACTGTACAGGAGACTTGATGGTAGGATGACTCTAGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAGGCAGGAAACCTTGGTTTGAATATGGTGGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAAACTCGTCCTGTTACCGTGACAAGGATTACTATAAAAGATACAGTTGAAGATCGGATACTGTCTCTTCAGGATGAGAAGAGAAAAATGGTTGCATCTGCTTTCGGGGAAGACCATGCTGGTGGGTCTGGAACTCGACTTACAGTGGATGATCTGAAATATCTGTTCATGGTGTAG 3078 0.4038 MDECIYIISSSDDDDDELEEIDVRKRTLPEWATTTERSSDYGRRGNSSTGANSSNLSSSSVYNHSQTKPLTLPVSSSNALNHRIARRDEPSYHAQNGNTGQQQTVNSRISKSHSADYEKMSSQQAFKRTLPSTLQPSATRALPSPLFASDIRLSNLKDSTDNSHLHDTYKNRRPGVGSSISGDRGYIHDSFFRGGDEGHLLYQNGGNRILPPSLVLGKAITPHFAISSESAYRSGIGDERSAENDERLIYEAALQDISQPKTEYDLPSGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVRNHKTEALNLDDDDDNGGINVEKHKNSVEANDLFPSREPSSSTQAPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKSHVELAKFDVVLTTYSIVTNEVPKLPLVEDDDIEDKNGERFGLSPEFSVRKRKKPFNGNKKGKKGRKGIDSSSECGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAAYKSFYNTIKVPISRNSEQGYKKLQAVLRAIMLRRTKGTLLDGKPIVNLPPKTIDLNKVDFSVEERAFYTKLESDSRIKFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFNCLDATFTICHVCNDTPDRAVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVFSKVTLRSCISDDGGTSSSSNSHLSDYTQVQRDDYISSKIQAVLDVLQSNCNVKISNSDLPNSGCCRDSPSSSSVDLDVDDSDSEVKIAKHTKKGSESTTEGSIKAIVFSQWTSMLDLVESSLCQFGILYRRLDGRMTLGARDKAVRDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQDEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00185 1025 Gene3D - 249 335 IPR038718 -
Viun10g00185 1025 Gene3D - 493 615 IPR038718 -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 9 77 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 32 77 - -
Viun10g00185 1025 Pfam SNF2-related domain 278 680 IPR000330 GO:0005524|GO:0140658
Viun10g00185 1025 MobiDBLite consensus disorder prediction 365 380 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 92 124 - -
Viun10g00185 1025 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 483 614 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 827 844 - -
Viun10g00185 1025 Pfam Zinc finger, C3HC4 type (RING finger) 717 762 - -
Viun10g00185 1025 Pfam Helicase conserved C-terminal domain 870 967 IPR001650 -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 476 499 - -
Viun10g00185 1025 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 854 1020 IPR001650 -
Viun10g00185 1025 CDD DEXDc_SHPRH-like 275 602 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 337 385 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 157 181 - -
Viun10g00185 1025 ProSitePatterns Zinc finger RING-type signature. 733 742 IPR017907 -
Viun10g00185 1025 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 711 768 IPR013083 -
Viun10g00185 1025 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 564 IPR014001 -
Viun10g00185 1025 Gene3D - 617 1024 IPR027417 -
Viun10g00185 1025 SUPERFAMILY RING/U-box 716 775 - -
Viun10g00185 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 1024 IPR027417 -
Viun10g00185 1025 ProSiteProfiles Zinc finger RING-type profile. 718 757 IPR001841 -
Viun10g00185 1025 SMART ultradead3 271 581 IPR014001 -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 157 171 - -
Viun10g00185 1025 CDD SF2_C_SNF 868 976 - -
Viun10g00185 1025 Gene3D - 372 456 IPR038718 -
Viun10g00185 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 602 IPR027417 -
Viun10g00185 1025 SMART helicmild6 884 967 IPR001650 -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 337 363 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 89 124 - -
Viun10g00185 1025 MobiDBLite consensus disorder prediction 827 846 - -
Viun10g00185 1025 SMART ring_2 718 756 IPR001841 -
Viun10g00185 1025 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 52 1024 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00185 Viun-Chr10 1393504 1405681 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00185 1 925 RAD5 or RAD16-like Gene Family AT1G50410 53.530 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun10g00185 SNF2_N 1.6e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00185 - - gmx:100795142 1604.73