Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00136 ATGGCCAATAATTTATCTTCAGGTGTTCAATCATTCGAGCTTGAACACGATCCCCACATTCTTGTAAATGTTTCCGACCAAGAAACCTTATACTCTTCCTCATACGAGAATCATATAGCGTATCCTTGTCATGTCGATGACGCAACTCAAATATTTGCATGCAAAACGGAAGCGCGTGAGGTGCACGCGCCGCCGAAGTGGAAGCACTTCCGGGGGGTGAGGCGGCGGCCATGGGGGAAGTTCGCGGCGGAGATATGGGATCCGAAGAGAAAACATGGCAGGGTTTGGCTGGGAACGTATGAAACTGAAGAAGAAGCAGGTTTGGCTTACGATAGGGCTGCGTTCAAGATGAGAGGTAGCAAAGCAAAGTTGAATTTTCCACACCTGATTGGATCCCACGCGCCGCCGGAGAAAGTGGGAGTGGCGGGAGTGGCTCGGAAGCTGCCGGAGACTTGTTTGCCACCTCTGTCTACGGCGGAGGATGGTTCACAGCCACAAGGGTCAAAGAAGAGGCGAAACCTAGCTGATTTGCTTAATAGGTTAGCCAAGAATAGAAACCAAGTATCTATGTATGTATGA 579 0.4991 MANNLSSGVQSFELEHDPHILVNVSDQETLYSSSYENHIAYPCHVDDATQIFACKTEAREVHAPPKWKHFRGVRRRPWGKFAAEIWDPKRKHGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPEKVGVAGVARKLPETCLPPLSTAEDGSQPQGSKKRRNLADLLNRLAKNRNQVSMYV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00136 192 PANTHER DNA-BINDING DOMAIN 56 160 IPR044808 GO:0003700|GO:0009873
Viun10g00136 192 FunFam Ethylene-responsive transcription factor 2 68 128 - -
Viun10g00136 192 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Viun10g00136 192 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Viun10g00136 192 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Viun10g00136 192 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Viun10g00136 192 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Viun10g00136 192 SUPERFAMILY DNA-binding domain 69 128 IPR016177 GO:0003677
Viun10g00136 192 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Viun10g00136 192 CDD AP2 68 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00136 Viun-Chr10 821689 822446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00136 56 132 AP2-EREBP Transcription Factor Family AT2G44840 73.077 4.01e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g00136 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00136 K09286 - gmx:100792115 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00136 10 821689 822446 Viun10g00136 10 821689 822446 ECH