Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00135 ATGGATGCTACAACATATTGTGATTTTTCTTCATTGCAATATCTTCAATATGTTCTTGAGCTTGAACATGGTTCCTCACACTCGGACTCTAATGGCATGGAAAGTATCATTGATGAGAAGAAAGTGTCTGAAATAGAACAGTCTAGGGCAGCGCGTGAAGTACACGCCCCTCCCAATTGGAAGCGATATAGGGGTGTGAGACGGCGGTTGTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAAAATGGAGGTAGGGTTTGGCTTGGGACTTATGTAACTGAAGAAGAAGCAGGTTTGGCTTATGATAGAGCTGCTTTCAAAATACATGGAAGTAAAGCTAAGTTAAATTTTCCTAATATTTTTGCTTCTGATGTATTATCATCATCAGAGCCACTGAAAAAAATAGCAACAAACAAGAAAAAGAAAACCCTAGTTGATTTGTTGAATAAGATGGCGAAGAATAGAAAAAGGGTTGGGTTATGA 489 0.3988 MDATTYCDFSSLQYLQYVLELEHGSSHSDSNGMESIIDEKKVSEIEQSRAAREVHAPPNWKRYRGVRRRLWGKFAAEIRDPKKNGGRVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPNIFASDVLSSSEPLKKIATNKKKKTLVDLLNKMAKNRKRVGL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00135 162 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Viun10g00135 162 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Viun10g00135 162 CDD AP2 61 121 IPR001471 GO:0003700|GO:0006355
Viun10g00135 162 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Viun10g00135 162 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Viun10g00135 162 PANTHER DNA-BINDING DOMAIN 43 132 IPR044808 GO:0003700|GO:0009873
Viun10g00135 162 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Viun10g00135 162 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Viun10g00135 162 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Viun10g00135 162 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00135 Viun-Chr10 813881 814571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00135 62 125 AP2-EREBP Transcription Factor Family AT2G44840 76.562 1.01e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g00135 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00135 K09286 - gmx:100793710 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00135 10 813881 814571 Viun10g00135 10 813881 814571 ECH
Viun10g00135 10 813881 814571 Viun5g00659 5 3965931 3966873 PCT