Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun10g00135 | ATGGATGCTACAACATATTGTGATTTTTCTTCATTGCAATATCTTCAATATGTTCTTGAGCTTGAACATGGTTCCTCACACTCGGACTCTAATGGCATGGAAAGTATCATTGATGAGAAGAAAGTGTCTGAAATAGAACAGTCTAGGGCAGCGCGTGAAGTACACGCCCCTCCCAATTGGAAGCGATATAGGGGTGTGAGACGGCGGTTGTGGGGGAAGTTCGCGGCGGAGATAAGAGATCCAAAGAAAAATGGAGGTAGGGTTTGGCTTGGGACTTATGTAACTGAAGAAGAAGCAGGTTTGGCTTATGATAGAGCTGCTTTCAAAATACATGGAAGTAAAGCTAAGTTAAATTTTCCTAATATTTTTGCTTCTGATGTATTATCATCATCAGAGCCACTGAAAAAAATAGCAACAAACAAGAAAAAGAAAACCCTAGTTGATTTGTTGAATAAGATGGCGAAGAATAGAAAAAGGGTTGGGTTATGA | 489 | 0.3988 | MDATTYCDFSSLQYLQYVLELEHGSSHSDSNGMESIIDEKKVSEIEQSRAAREVHAPPNWKRYRGVRRRLWGKFAAEIRDPKKNGGRVWLGTYVTEEEAGLAYDRAAFKIHGSKAKLNFPNIFASDVLSSSEPLKKIATNKKKKTLVDLLNKMAKNRKRVGL | 162 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun10g00135 | 162 | SMART | rav1_2 | 62 | 126 | IPR001471 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | Pfam | AP2 domain | 62 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | CDD | AP2 | 61 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | Gene3D | AP2/ERF domain | 61 | 121 | IPR036955 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | FunFam | Ethylene-responsive transcription factor 2 | 61 | 121 | - | - | |
Viun10g00135 | 162 | PANTHER | DNA-BINDING DOMAIN | 43 | 132 | IPR044808 | GO:0003700|GO:0009873 | |
Viun10g00135 | 162 | PRINTS | Ethylene responsive element binding protein signature | 63 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | PRINTS | Ethylene responsive element binding protein signature | 102 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | ProSiteProfiles | AP2/ERF domain profile. | 62 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Viun10g00135 | 162 | SUPERFAMILY | DNA-binding domain | 62 | 121 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun10g00135 | Viun-Chr10 | 813881 | 814571 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun10g00135 | 62 | 125 | AP2-EREBP Transcription Factor Family | AT2G44840 | 76.562 | 1.01e-31 | 111 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Viun10g00135 | AP2 | 1.2e-11 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun10g00135 | K09286 | - | gmx:100793710 | 225.713 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun10g00135 | 10 | 813881 | 814571 | Viun10g00135 | 10 | 813881 | 814571 | ECH | |
Viun10g00135 | 10 | 813881 | 814571 | Viun5g00659 | 5 | 3965931 | 3966873 | PCT |