Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00134 ATGGCCACCACAACATCATCATCAACATCATCATGTGATTTCTCATCCTTGGAATCTATTCAACACTATCTTCTCGAACCAGATTATTCCGACACTCTCATGAGCGTTTACAGTCACAAAGTTTTGTGTTCTCCGATGTACAAACCACTCCAAAACCCTACTACCTCGGAGGGTGTCCATGATGCAGAGAACATGTTGAAAAAGGAGCGTGAGGGTCACGCGCCGCCGGTGTGGAAGCGTTTCCGAGGTGTGAGGCGGCGGCCATGGGGGAAGTTCGCCGCAGAGATAAGGGATCCAGAGAGGAACGGTGCGAGAATTTGGCTTGGGACTTATGAAACTGAAGAAGAAGCTGGTTTGGCTTATGATAAAGCTGCGTTTAAGATGCGTGGTAACAAAGCTAAGTTAAATTTTCCTCATCTTATTGATTCTCATGTGTCTCTGAAACCAGTTAGAACAATGAAAGGTTCGAAACAAAACGCTTTCAAATCTTATTCATCGTTTTCTCTAACTTCAGAGACAGAAGAAGGTTCTAAGAAGAGGAAAAACATGGTTGAGTTGTTGAATAAGTTGGCTAAGAATAGAAGCCAAATGCAAGTGTTTGAAACCAGTTTATATGATTAA 621 0.4283 MATTTSSSTSSCDFSSLESIQHYLLEPDYSDTLMSVYSHKVLCSPMYKPLQNPTTSEGVHDAENMLKKEREGHAPPVWKRFRGVRRRPWGKFAAEIRDPERNGARIWLGTYETEEEAGLAYDKAAFKMRGNKAKLNFPHLIDSHVSLKPVRTMKGSKQNAFKSYSSFSLTSETEEGSKKRKNMVELLNKLAKNRSQMQVFETSLYD 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00134 206 PRINTS Ethylene responsive element binding protein signature 81 92 IPR001471 GO:0003700|GO:0006355
Viun10g00134 206 PRINTS Ethylene responsive element binding protein signature 120 140 IPR001471 GO:0003700|GO:0006355
Viun10g00134 206 PANTHER DNA-BINDING DOMAIN 57 182 IPR044808 GO:0003700|GO:0009873
Viun10g00134 206 ProSiteProfiles AP2/ERF domain profile. 80 138 IPR001471 GO:0003700|GO:0006355
Viun10g00134 206 CDD AP2 79 140 IPR001471 GO:0003700|GO:0006355
Viun10g00134 206 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Viun10g00134 206 FunFam Ethylene-responsive transcription factor 2 79 139 - -
Viun10g00134 206 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Viun10g00134 206 SMART rav1_2 80 144 IPR001471 GO:0003700|GO:0006355
Viun10g00134 206 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00134 Viun-Chr10 805798 806553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00134 19 151 AP2-EREBP Transcription Factor Family AT2G44840 46.207 1.33e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g00134 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00134 K09286 - gmx:100527194 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00134 10 805798 806553 Viun10g00134 10 805798 806553 ECH
Viun10g00134 10 805798 806553 Viun5g00658 5 3959052 3959957 PCT