Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00133 ATGAATTTCAACACCACTCTTGAATCCCAAGATTATGCTCTTCTTCAATCCATTCAACGGTTCCTCCTCGACGATAACCAAGACTTAAATGCACTCACGGCGGTTTTGGCCGCACCCAGCGGTGTTTCACCTCGGGAGAGCGGCGGCGGAGGATCCACGTCCACCCTTTTCACCACCGCCGTCGATTTGGGACAGCCAACAACTACTTCTGCAGAGGCGCGTGATGAATCTACGGCGGCGCGTGGGGAATACACGGAGGAGCGTGGTGGAAACGCGTCGTACCAGAGGTTCAAGGGAGTGAGACGAAGGCCGTGGGGGAAGTTTGCGGCTGAGATAAGAGATCCGAAGAGGAACGGCGCGAGAGTTTGGCTTGGGACTTACGACTCGGCTGAGAGTGCGGCTTTGGCTTATGATCGAGCCGCGTTCGAAATGCGTGGCTCCAAAGCTAAGCTTAATTTTCCTCATTTAATTGGAAGTCATGAGCCAAGCCAGAAAGAGTAA 501 0.5369 MNFNTTLESQDYALLQSIQRFLLDDNQDLNALTAVLAAPSGVSPRESGGGGSTSTLFTTAVDLGQPTTTSAEARDESTAARGEYTEERGGNASYQRFKGVRRRPWGKFAAEIRDPKRNGARVWLGTYDSAESAALAYDRAAFEMRGSKAKLNFPHLIGSHEPSQKE 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00133 166 PANTHER DNA-BINDING DOMAIN 75 159 IPR044808 GO:0003700|GO:0009873
Viun10g00133 166 Pfam AP2 domain 96 146 IPR001471 GO:0003700|GO:0006355
Viun10g00133 166 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Viun10g00133 166 CDD AP2 95 156 IPR001471 GO:0003700|GO:0006355
Viun10g00133 166 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Viun10g00133 166 MobiDBLite consensus disorder prediction 60 93 - -
Viun10g00133 166 FunFam Ethylene-responsive transcription factor 2 95 155 - -
Viun10g00133 166 PRINTS Ethylene responsive element binding protein signature 136 156 IPR001471 GO:0003700|GO:0006355
Viun10g00133 166 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Viun10g00133 166 MobiDBLite consensus disorder prediction 60 75 - -
Viun10g00133 166 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
Viun10g00133 166 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00133 Viun-Chr10 802407 803163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00133 66 162 AP2-EREBP Transcription Factor Family AT2G44840 63.000 4.17e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun10g00133 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00133 K09286 - gmx:100806359 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00133 10 802407 803163 Viun10g00133 10 802407 803163 ECH