Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun10g00116 | ATGAACTTCCCTTGTGCTGTACAAGGAACTATATTTTCTCAGAGGAAGCAATTAACTCATGGATGCACAAACCAAAATTCAAAGGATTATTACCTAGTGCAGGATAGTTGCATGTTGCGTTCTGAAAAATCATTGAGGAGAACACTCTTCTTCTCTGTCTTGGTCTCAACTGGTTTTTTTCCAACTTTGTCTTCTTATGCGAAGACAAAGAGTACGAATCCTTATGACGAAAAACGGTTGCTACAACAAAATCGGCGGATACAGAAGGAAAACAATGCGCCGGAGGACTTCCCAAATTTTATCAGAGAAGGTTTTCAAGTTAAAATAGTATCTTCAGAAAACTATTTAAAGAGTGAGTCAGGGCTCATATACCGGGATTTTGTAGTTGGTGAAGGTGATTGCCCAAAGGATGGTCAGCAGGTAACTTTTCACTATGTTGGTTATAATGAATCTGGTCGTCGAATCGACAGCACTTACTTGCAGGGTACTCCTGCCAAAATCCGCATGGGTACCAAGGCATTAGTTCCAGGATTTGAGGAGGGAATTAGAGAAATGAAACCAGGTGGGAAGAGAAGAATCATCATCCCCCCTGAACTTGGACCACCAGTAGGGCCTTCAACCTTTTTCAGCTCAAAACAGTTTGAAGTTTTTGATGTGGAGCTATTAAGCGTACAAAACTGTGAAAGGAGAACAGTAGCCTTTTACTCAGATGTCATTTGCAATTAA | 726 | 0.4077 | MNFPCAVQGTIFSQRKQLTHGCTNQNSKDYYLVQDSCMLRSEKSLRRTLFFSVLVSTGFFPTLSSYAKTKSTNPYDEKRLLQQNRRIQKENNAPEDFPNFIREGFQVKIVSSENYLKSESGLIYRDFVVGEGDCPKDGQQVTFHYVGYNESGRRIDSTYLQGTPAKIRMGTKALVPGFEEGIREMKPGGKRRIIIPPELGPPVGPSTFFSSKQFEVFDVELLSVQNCERRTVAFYSDVICN | 241 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun10g00116 | 241 | SUPERFAMILY | FKBP-like | 60 | 225 | - | - | |
| Viun10g00116 | 241 | Gene3D | - | 82 | 233 | IPR046357 | GO:0003755 | |
| Viun10g00116 | 241 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 135 | 221 | IPR001179 | GO:0003755 | |
| Viun10g00116 | 241 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 138 | 225 | IPR001179 | GO:0003755 | |
| Viun10g00116 | 241 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP20-2, CHLOROPLASTIC | 3 | 241 | IPR044239 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun10g00116 | Viun-Chr10 | 724393 | 728102 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun10g00116 | 133 | 227 | Calmodulin-binding Proteins | AT5G48570 | 35.052 | 1.44e-10 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun10g00116 | - | - | var:108347486 | 466.848 |